Gene detail

Gene detail information of Glyur001422s00031018.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G20330.1	0	sterol methyltransferase 2
NR	XP_003527489.1	0	PREDICTED: 24-methylenesterol C-methyltransferase 2-like [Glycine max]
COG	YP_001518834.1	1.00E-23	cyclopropane-fatty-acyl-phospholipid synthase [Acaryochloris marina MBIC11017]
Swissprot	tr\|Q39227\|SMT2_ARATH	0	24-methylenesterol C-methyltransferase 2
trEMBL	tr\|I1K7G0\|I1K7G0_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA06G02330.1}

Sequence

Transcript Sequence

>Glyur001422s00031018.1
ATGGACTCTCTCTCTCTCTTCTGCACCGGAGCCCTCCTCGCCGGCGGCCTCTACTGGTTCNTCTGCATCCTCGGCCCCGCCGAACAAAAGGGCAAACGCGCCACCGATCTGTCCGGCGGTTCCATCTCCGCNGAGAAAGTCCAGGACAACTACAAACAGTACTGGTCCTTCTTCCGCCGCCCCAAGGAGATCGAAAAATCCGAGAAGGTCCCAGACTTCGTCGACACCTTCTACAATCTCGTTACCGACATCTACGAGTGGGGGTGGGGCCAGTCCTTCCACTTCTCCCCCTCCATCCCCGGCAAGTCCCACCGCGACGCNACGCGCCTCCACGAGGAGATGGCCGTGGATCTCATCGAGGCAAAGCAGGGCNACAAAATCCTCGACGTGGGCTGCGGCGTGGGTGGGCCCATGCGGGCCATCGCGGCCCACTCGCGCGCCAACGTCGTGGGCATCACCATCAACGAGTACCAGGTGAATCGGGCCAGGCTTCACAACAAGAAGGCCGGGCTCGACTCGCTCTGCGAGGTCGTGTGCGGCAATTTCCTCCAGATGCCGTTCCCAGACGAGAGCTTCGACGGCGCATACTCAATCGAGGCCACGTGTCACGCGCCGAAGCTGGAGGAGGTTTACGCCGAGGTTTTCCGTGTTCTGAAGCCTGGGGCTCTCTACGTGTCGTACGAATGGGTCACGACGGACAAGTACAAGGGCGATAACGCGGAACACGTGGANATCATTCAGGGGATTGAGAGGGGTGATGCGTTGCCTGGGCTGAGGAGTTACGCCGACATAGCCGAGACGGCGCGTAAGGTTGGGTTCGAGGTTGTTAAGGAGCGGGATCTGGCGAAGCCACCGGCTCAGCCATGGTGGAGCCGGTTGAAGATGGGTAGGATCGCCTACTGGCGGAANCACATTGTGGTCACTGTTCTCTCCGCCTTGGGAATAGCGCCCAAGGGTACCGTGGATGTGCATGAGATGCTGTTCAAGACCGCTGACTTTTTGACCAGAGGGGGTGACACTGGAATCTTCTCTCCCATGCACATGATCCTCTGCAGAAAACCCAAAGACAGAGACACACAGAGCAATTGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01422	37726	38814	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K08242	E2.1.1.143	EC:2.1.1.143	Steroid biosynthesis	map00100

Gene Ontology

biological_process

GO:0006694 steroid biosynthetic process

GO:0008152 metabolic process

molecular_function
GO:0008168 methyltransferase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001422s00031018.1	PF08241.7	Methyltransf_11	128	224	3.60E-21
Glyur001422s00031018.1	PF08498.5	Sterol_MT_C	293	355	2.50E-14

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	141.113
SRR1783600	control	142.061
SRR1783602	moderate drought stress	143.621
SRR1811619	moderate drought stress	140.992

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	166.192
DRR006520	Root Summer glycyrrhizin high producing strain	159.497
DRR006521	Root Winter glycyrrhizin high producing strain	167.704
DRR006522	Root Winter glycyrrhizin high producing strain	162.255
DRR006523	Root Summer glycyrrhizin low producing strain	217.021
DRR006524	Root Summer glycyrrhizin low producing strain	218.215
DRR006525	Leaf Summer glycyrrhizin high producing strain	183.527
DRR006526	Leaf Summer glycyrrhizin high producing strain	177.419

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	323.315
SRR2868004	Drought Stress (root)	299.182
SRR2967015	Control (root)	313.983

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	162.744
SRR9715740	Leaf	142.182
SRR9715741	Leaf	147.894
SRR9715739	Root	438.524
SRR9715742	Root	300.214
SRR9715743	Root	300.909

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	254.110
SRR8749028	MeJA induced 9h	174.276
SRR8749029	MeJA induced 9h	256.351
SRR8749030	Uninduced	280.628
SRR8749031	Uninduced	84.239
SRR8749032	Uninduced	290.533

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	157.383
SRR8400027	Control - Root	196.517