Gene detail

Gene detail information of Glyur001422s00031015.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G20270.1	1.00E-112	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein
NR	XP_006577956.1	0	PREDICTED: prolyl 4-hydroxylase subunit alpha-1-like isoform X1 [Glycine max]
COG	YP_003277000.1	6.00E-48	2OG-Fe(II) oxygenase [Comamonas testosteroni CNB-2]
Swissprot	tr\|Q9LN20\|P4H3_ARATH	1.00E-157	Probable prolyl 4-hydroxylase 3 (Precursor)
trEMBL	tr\|I1JSZ3\|I1JSZ3_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA04G02300.1}

Sequence

Transcript Sequence

>Glyur001422s00031015.1
ACTTGCTGGTTAAAAAAAAGTTGAAGAATGCAACACCATTTCATTAGTCATACTGGGCCAAAAAACATTCATATATCCTGATTTTATATTTTGAAATTTTANCATAAAATAGATATCAGAGAAGACTCGGAGCACTAGACGCGGGGAAATATTTTAGTAAGGAGAGAGTAGCGACTGGAGTCAATGAAGCCGTGACAACATGATTCTCTGCATTTGTTTGTTTAAATCGTATTGTTGTTTAGGGTTTTGTAGCGGTTTCTCAATTCAACGCTATCGCAACCATATGGCGAAAGGAAAATACACGCATACACGGTCACAGGGGAAGAAATTGTCGACGGTTACGCTCGTTTTCTGGATGCTTTTAATGCTCACACTAGTCATTCTCGTGCTCCTTGCACTCGGAATAGTTTATCTTCCAACTACCAGCGANGATTCTCCAACCACAGATCTCAGTGCCTTTAGGCGCAAGACCTCTGAAAGTGGTTACAGNTCGGTAGAGAGCCAGAAGCAGTGGACCGAGATTCTCTCCTGGGAGCCAAGAGCTTTCATCTATCACAATTTCCTGTCAAAAGAAGAATGTGAATACTTGATAAATNTTGCCAAACCTTTTATGGTAAAATCAAGTGTTGTTGATAGCAAGACTGGAAAGAGTACAGAAAGCAGGGTTCGAACTAGTTCAGGAATGTTTTTGAAGAGAGGAAAGGACAAAATTATCCAGAATATAGAAAGAAGAATTGCTGACTTTACCTTCATACCATTAGAGAATGGAGAAGGACTTCAGGTTCTTCACTATGGAGTTGGGCAGAAATATGAGCCTCACTACGATTACTTCCTTGATGACTTCAACACTAAGAATGGAGGCCAACGTATTGCTACAGTTCTTATGTACCTTTCAGATGTTGAAGAAGGGGGAGAGACCATATTTCCTGCTGCCAAGGCAAACTTTAGTTCTGTCCCATGGTGGAATGATTTATCTNAATGTGCTCGAAAGGGTCTATCAGTGAAACCAAAAATGGGTGATGCTTTGCTGTTTTGGAGCATGAGGCCGGATGCCACACTTGATCCATCTAGTTTACATGGAGGTTGTCCAGTAATCAGAGGAAATAAATGGTCTTCNACGAAGTGGATGCATCTTGAGGAGTACAAAGTTTAAGCCAATTTCCTGTTCAGGTACGCCACGTTAAACGCGTCGGTTTCTCTGGCTAATGATGGCGAATCTTGGTGTCGCTCATAAGTCACCGGGGAAAGGGTGGTGCTTTGGATTGATGATAGGAGTTGTTGTATTGGTTAANAGTTTCAAACGAATTTGGGTCTTACTACTAGGGTATATGTTGAATTATGTGGTTACATTTGTAATTTAGGN

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01422	18920	24577	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K00472	P4HA	EC:1.14.11.2	Arginine and proline metabolism	map00330

Gene Ontology

biological_process
GO:0055114 oxidation-reduction process

molecular_function

GO:0005506 iron ion binding

GO:0016491 oxidoreductase activity

GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen

GO:0016706 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors

GO:0031418 L-ascorbic acid binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001422s00031015.1	PF03171.15	2OG-FeII_Oxy	190	311	1.70E-12

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	13.656
SRR1783600	control	14.263
SRR1783602	moderate drought stress	13.740
SRR1811619	moderate drought stress	13.605

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	22.526
DRR006520	Root Summer glycyrrhizin high producing strain	22.444
DRR006521	Root Winter glycyrrhizin high producing strain	22.802
DRR006522	Root Winter glycyrrhizin high producing strain	21.726
DRR006523	Root Summer glycyrrhizin low producing strain	11.222
DRR006524	Root Summer glycyrrhizin low producing strain	11.602
DRR006525	Leaf Summer glycyrrhizin high producing strain	11.846
DRR006526	Leaf Summer glycyrrhizin high producing strain	12.351

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	28.738
SRR2868004	Drought Stress (root)	27.567
SRR2967015	Control (root)	29.111

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	11.452
SRR9715740	Leaf	15.439
SRR9715741	Leaf	15.508
SRR9715739	Root	4.430
SRR9715742	Root	14.727
SRR9715743	Root	9.295

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	19.778
SRR8749028	MeJA induced 9h	17.972
SRR8749029	MeJA induced 9h	14.902
SRR8749030	Uninduced	14.340
SRR8749031	Uninduced	8.981
SRR8749032	Uninduced	8.941

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	28.766
SRR8400027	Control - Root	27.917