Gene detail information of Glyur001421s00031589 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G51170.1 | 5.00E-69 | |
| NR | XP_004515467.1 | 8.10E-136 | PREDICTED: putative U6 snRNA phosphodiesterase-like isoform X1 [Cicer arietinum] |
| trEMBL | tr|A0A072TJH3|A0A072TJH3_MEDTR | 9.00E-128 | U6 snRNA phosphodiesterase {ECO:0000256|HAMAP-Rule:MF_03040} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01421 | 62903 | 70865 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001421s00031589.1 | PF09749.4 | HVSL | 36 | 268 | 2.00E-46 |
| Glyur001421s00031589.2 | PF09749.4 | HVSL | 36 | 205 | 5.50E-29 |
| Glyur001421s00031589.3 | PF09749.4 | HVSL | 36 | 214 | 8.40E-30 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 14.990 |
| SRR1783600 | control | 15.288 |
| SRR1783602 | moderate drought stress | 18.153 |
| SRR1811619 | moderate drought stress | 18.290 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 16.345 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 16.245 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 27.643 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 25.105 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 12.624 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 12.358 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 8.179 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 7.749 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 7.703 |
| SRR2868004 | Drought Stress (root) | 8.689 |
| SRR2967015 | Control (root) | 9.080 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 10.612 |
| SRR9715740 | Leaf | 13.962 |
| SRR9715741 | Leaf | 12.272 |
| SRR9715739 | Root | 2.414 |
| SRR9715742 | Root | 4.611 |
| SRR9715743 | Root | 4.443 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 14.673 |
| SRR8749028 | MeJA induced 9h | 7.653 |
| SRR8749029 | MeJA induced 9h | 8.616 |
| SRR8749030 | Uninduced | 6.607 |
| SRR8749031 | Uninduced | 5.108 |
| SRR8749032 | Uninduced | 5.626 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 12.546 |
| SRR8400027 | Control - Root | 11.369 |