Gene detail

Gene detail information of Glyur001421s00031587

Functional Annotation

Database	Orthologs	Annotation
TAIR	AT1G79600.1	Protein kinase superfamily protein
NR	XP_007140799.1	hypothetical protein PHAVU_008G143200g [Phaseolus vulgaris]
COG	YP_007141982.1	ABC-1 domain-containing protein [Crinalium epipsammum PCC 9333]
Swissprot	tr\|Q9MA15\|Y1796_ARATH	Uncharacterized aarF domain-containing protein kinase At1g79600, chloroplastic (Precursor)
trEMBL	tr\|V7B4R4\|V7B4R4_PHAVU	Uncharacterized protein {ECO:0000313\|EMBL:ESW12794.1}

Sequence

Transcript Sequence

>Glyur001421s00031587.1
TTGATATCCATGTCTACAGTGGCACAACCGTGTCCTTCATGGACGCGCGGTTCCNTTCCCGTTTCGAGGCGCATCCAACGACGTCGTTTCAACGGCAGAACCAACCTCACGCGCCTGAACCCACAACGACGTCGTCAAGTTCTAGCTGCTGCTGTGGTGGAAGCAGCAACGCCTTCAAGTTCAAGCAACTCACCTTCGCCCAGAGACGGGTCCAACCAGCAGGTCCTGACCCTTCAAGTGGACCGTGCCAATGAGTTACAAGCCGAGTCCAGAGCCCTTGGTCGCGCCACCGATGCCACTCTCTACACCCCTCAACTCTTGGCCACCAAATATGGCTCCAAGCCNTTCAAGGTCTTCCCTTTGAACCCTTTTTGGTCACCCTTTTTGGAATATCCTTCGTGGATTGTGACTGCATTGGGTTCTTTTGGGTTGAAGCTGTTGTTGGACCAGAGGAGTGGAGTGATTGATCAGAACAGAAGGGTTCGTGCTGCTGAGCTCAAGACCATATTCACGCAGCTGGGACCCACTTTTGTGAAGTTGGGTCAGGGACTGTCCACCAGGCCTGACATATGCCCAGCAGAGTATTTGGAGGAGCTAGCTGAGCTTCAAGATGGTTTGCCTACATTTCCTGATGACGAGGCCTTTGCATGCATTGAGAGGGAATTAGGAGTATCNCTTGAGTCCATTTATTCTTCTATATCACCATCACCCATAGCAGCAGCTAGTTTGGGTCAAGTTTATAAAGCTCGGTTGAAGTATTCGGGGAAAATNGTGGCTGTCAAGGTGCAGCGTCCTAGCATTGAGGAAGCTATAGGATTGGACTTCTACCTGATAAGAGGTCTCGGGTTTTTCATAAATAAATACGTTGACATAATCACCACCGATGTTGTTGCCCTTATTGATGAATTTGCNCGTAGAGTTTTTCAAGAGCTCAACTATGTGCAGGAGGGACAAAATGCGAGGAGGTTCAAAAAATTGTATGCTGACAAGCAAGATATCTGTGTCCCTGATGTTTTCTGGGATTATACGAGTGCTAAAGTACTGACAATGGAGTGGGTTGAGGGAGTCAAACTAAATGAGCAAGAAGCTATTGAGAAACAAGGGTTAAAAGTCCTGGATCTGGTGAATGCAGGCATACAGTGCAGCCTTAGACAGCTACTCGAGTATGGATATTTCCATGCAGATCCTCATCCTGGGAACCTTTTAGCGACACCTGAGGGAAAGCTTGCTTTCCTTGACTTTGGGATGATGAGCGAGACTCCGGAAGATGCAAGATCTGCCATAATTGGTCATGTTGTTCATTTGGTTAACCGGGATTACGAAGCNATGGCTCGTGACTACTATNCTCTTGATTTCNTGTCACCTNATGTTGATGTTTCTCCAATTGTGCCAGCACTTAGAAACTTTTTCGATGATGCACTTAATTATACTGTGAGTGAACTTAACTTCAAGACACTAGTGGATGGTCTGGGAAATGTCTTGTATCAATTTCCATTTAATGTCCCAGCATACTATGCTTTGATATTGAGGTCTCTCACTGTTTTAGAAGGTTTAGCACTTAATGCGGATCCCAATTTTAAGGTGCTTGCGGCTTCATACCCATATTTTGCTAAGCGTCTCTTAACAGATCCAAATCCATATCTGAGAGATGCTCTTATTGAGTTGCTTTTCAAGGATGGGAGGTTCAGGTATNTATGCATTTCACTAGGCAGAATGGACAAGGATTTCTCTGCTAAAGAGGCTTTACAACCTGTCCTAAAGGTATTACTGAGTCCAGATGGTAAAGAGCTCAGGACTCTAGTTATCAAAGAGGCTGTTCGCGTAACTGAAGCTTTTACTCTCAGCACGATTTCTGATACATACAAGTCAGTTCCCGATTTTATGAGGACGCTTGTTTTCAATGGCAACGCAAATGGTCCCCTTATGATGTCAGAATCTGAAATGCAAAGCATGATAGAGCTTAGAGATCAAGTATCCAGGATGTGGGGACTTCTGCAATCCTCTAATGATTTTGATCCAGCTCTTTTGCTACCTATACTACAGGTCCTTCAGCAACCTGAGGCACGCCGACTTGGGGGGAGTGTCATGGGTGGGATCACTCAACGTCTTGCAGCANGCTTTCTGCAGCAAGTACTTCGAGTTCCAGCAACAGCTTCTACATAG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01421	52176	58518	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006468 protein phosphorylation

molecular_function

GO:0004672 protein kinase activity

GO:0005524 ATP binding

GO:0016772 transferase activity, transferring phosphorus-containing groups

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001421s00031587.1	PF03109.11	ABC1	221	338	1.10E-29
Glyur001421s00031587.2	PF03109.11	ABC1	221	338	1.10E-29
Glyur001421s00031587.3	PF03109.11	ABC1	201	318	1.10E-29
Glyur001421s00031587.4	PF03109.11	ABC1	201	318	1.10E-29

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	3.415
SRR1783600	control	3.488
SRR1783602	moderate drought stress	5.516
SRR1811619	moderate drought stress	5.557

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	3.964
DRR006520	Root Summer glycyrrhizin high producing strain	4.063
DRR006521	Root Winter glycyrrhizin high producing strain	47.811
DRR006522	Root Winter glycyrrhizin high producing strain	46.210
DRR006523	Root Summer glycyrrhizin low producing strain	3.889
DRR006524	Root Summer glycyrrhizin low producing strain	3.482
DRR006525	Leaf Summer glycyrrhizin high producing strain	60.922
DRR006526	Leaf Summer glycyrrhizin high producing strain	59.993

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	4.933
SRR2868004	Drought Stress (root)	5.860
SRR2967015	Control (root)	6.906

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	49.848
SRR9715740	Leaf	60.504
SRR9715741	Leaf	51.456
SRR9715739	Root	2.470
SRR9715742	Root	5.536
SRR9715743	Root	4.705

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	3.906
SRR8749028	MeJA induced 9h	4.391
SRR8749029	MeJA induced 9h	3.141
SRR8749030	Uninduced	3.783
SRR8749031	Uninduced	2.855
SRR8749032	Uninduced	3.402

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	9.639
SRR8400027	Control - Root	9.558