Gene detail information of Glyur001421s00031585 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G51170.2 | 4.00E-07 | |
| NR | XP_004515471.1 | 4.19E-08 | PREDICTED: putative U6 snRNA phosphodiesterase-like isoform X5 [Cicer arietinum] |
| trEMBL | tr|I1J6I2|I1J6I2_SOYBN | 3.00E-08 | U6 snRNA phosphodiesterase {ECO:0000256|HAMAP-Rule:MF_03040} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01421 | 26485 | 38272 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001421s00031585.1 | PF09749.4 | HVSL | 35 | 76 | 1.10E-07 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 1.383 |
| SRR1783600 | control | 1.161 |
| SRR1783602 | moderate drought stress | 1.942 |
| SRR1811619 | moderate drought stress | 1.464 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 5.234 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 3.527 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 6.906 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 7.876 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 1.694 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.764 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 2.428 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 1.648 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 1.446 |
| SRR2868004 | Drought Stress (root) | 2.348 |
| SRR2967015 | Control (root) | 2.136 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 2.994 |
| SRR9715740 | Leaf | 6.639 |
| SRR9715741 | Leaf | 3.999 |
| SRR9715739 | Root | 0.809 |
| SRR9715742 | Root | 1.236 |
| SRR9715743 | Root | 1.044 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 2.589 |
| SRR8749028 | MeJA induced 9h | 1.025 |
| SRR8749029 | MeJA induced 9h | 1.476 |
| SRR8749030 | Uninduced | 1.220 |
| SRR8749031 | Uninduced | 0.648 |
| SRR8749032 | Uninduced | 1.443 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 4.077 |
| SRR8400027 | Control - Root | 3.803 |