Gene detail

Gene detail information of Glyur001419s00035736.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G64660.1	3.00E-102	CYS, MET, PRO, and GLY protein 2
NR	XP_004502912.1	0	PREDICTED: U-box domain-containing protein 27-like [Cicer arietinum]
COG	YP_001958455.1	6.00E-08	hypothetical protein Aasi_1435 [Candidatus Amoebophilus asiaticus 5a2]
Swissprot	tr\|Q9FLF4\|PUB27_ARATH	2.00E-127	U-box domain-containing protein 27
trEMBL	tr\|G7JAZ3\|G7JAZ3_MEDTR	0	Plant U-box protein {ECO:0000313\|EMBL:AES72815.1}

Sequence

Transcript Sequence

>Glyur001419s00035736.1
ATGGTGAGAGTGAGAGATGATCTATGCATAACCGTTCCCAGCTTCTTCAAGTGCCCAATCTCACTCGACGTGATGAAATCCCCTGTGAGCCTCTGCACCGGAGTCACCTACGACCGCTCCAGCATCCAGCGTTGGCTAGACCAAGGCAACGACACTTGCCCCGCCACCAAGCAGCCCCTCCACACTAAGATCTTCGTCCCCAACCGCACCCTCCACAGCCTCATCCAGATCTGGACCCACTCGCTCCACCACCCGGTCAACCCGCCCGATTCCCCTTCACACCCTTCCCGGGACCAAGTCCTCCAAGCCATCTCCGACCTGCNCTCTCACACTGACAACAACCGGTTCGGCCCAATCAAGAAAGTGGTTCGGTTCGCCGAAGATTCTGACTCGAACCGAGCCTTCCTCGCGAAAATCGACGGCTTCGGGCCACTGCTGGTTGGTTTCCTCGACAATGTCGACGGCGGAGAATTTGAANTTCTCGAACAAGTTGTCAGGGCGTTGGGTTTGGTTCTGGATAAAATCGAAGATCGCGAGGGGTTGAAGAACCAAATGTTGAAGGGGGAAACGAAGAATCCGCATTGCTTAGATTCACTGCTTCTCGTTCTGCAACGTGGAAGCACCGATTCGAGAATCGCCTCCGCTAGGGTTCTGAAATCCATCGCCGTTGACGCAGAGTCACAGCTTCTCATCGCCGAGAAGGAAGGCCTGGTGGCCGAATTACTGAAATTATCGGCGCCGGAGAAAGATCCGGCGACGGTTGAAAACTGCCTTGCGTGTTTGGTTGCAATTTCGAAGCCGAAACGGAACAAGGCGAAACTGGTGAGTTTGGGAGCAATGAGGACGCTATCGAGGCTTCTGAGGGAGGAATCGAAATCGAACACGGTCGTGGCGGTTGTGGAGAATGTGCTGAGGCTGGTTGAAACGGCGTCGTCGACGAGGGAAGGGAGGGAAGAGCTGTGCGGGGATAGGGCGTGTTTGGCGGCGATACTGAACAGGGTTCTGAAGGTGTCGAAGGTTGCTACGGAACACGCGGTGACGACGCTGTGGAGTGTGTGCTATCTGTTTCGGGATGAGAAGGCAAGGGAAGCGGTTGCGGAGGCGAATGGGTTGACCAAGATTCTGTTACTGATGCAGAGTAGCAATTGTTCCCCTCAGGTGCGACTAATGTGCACGGATTTGCTCAAGGTTTTCCGGGTTAATTCCAAATCGATACTCTCTTCGTACGACACCAAGACCACACATATTGTGCCGTTTTGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01419	61476	62735	-

Gene family

Gene family	subfamily
Ubiquitin Family	U_box

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0016567 protein ubiquitination

molecular_function

GO:0004842 ubiquitin-protein transferase activity

GO:0005488 binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001419s00035736.1	PF04564.10	U-box	12	80	1.50E-17

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	1.546
SRR1783600	control	1.833
SRR1783602	moderate drought stress	2.956
SRR1811619	moderate drought stress	2.879

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	4.004
DRR006520	Root Summer glycyrrhizin high producing strain	4.033
DRR006521	Root Winter glycyrrhizin high producing strain	0.133
DRR006522	Root Winter glycyrrhizin high producing strain	0.115
DRR006523	Root Summer glycyrrhizin low producing strain	11.644
DRR006524	Root Summer glycyrrhizin low producing strain	12.495
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.450
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.441

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	2.149
SRR2868004	Drought Stress (root)	4.896
SRR2967015	Control (root)	7.262

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	1.314
SRR9715740	Leaf	0.301
SRR9715741	Leaf	0.829
SRR9715739	Root	1.400
SRR9715742	Root	1.523
SRR9715743	Root	1.429

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	19.696
SRR8749028	MeJA induced 9h	17.395
SRR8749029	MeJA induced 9h	8.642
SRR8749030	Uninduced	6.718
SRR8749031	Uninduced	1.645
SRR8749032	Uninduced	1.372

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	4.627
SRR8400027	Control - Root	7.293