Gene detail

Gene detail information of Glyur001419s00035735.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G24320.1	4.00E-102	Transducin/WD40 repeat-like superfamily protein
NR	XP_003522494.1	0	PREDICTED: uncharacterized protein LOC100780979 isoform X1 [Glycine max]
COG	YP_007121051.1	2.00E-23	WD40 repeat-containing protein [Microcoleus sp. PCC 7113]
Swissprot	tr\|Q9LXN4\|HIRA_ARATH	1.00E-11	Protein HIRA
trEMBL	tr\|I1JY39\|I1JY39_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA04G39290.1}

Sequence

Transcript Sequence

>Glyur001419s00035735.1
GGATCCTGGGGACGGGTTTCCAACATGCAAAGAACTGTTGTCATTGGTTGTCTTCTGGGGCTGATGGTTGGTTCCTCGTACTTGGTCCCTGCTTGTGCTGCTAGTAACATTTTTTATTCCGCTGAGTTTCTCACAATCAGCGAGGGAAACTCGGTCCGTTGATTTGGGGGCTTTGTGTTGATATTTAAGGTGTTGCAGGGCAGTGAGAATTTGTGAGTAAGGGGAAAATTTTTGGAAAGTGACATTTTTATTTTTTTTCATGTGGGACTTTTTTGTTTGAGACTACAAGATATGCTGATCTCTGATGAAGGAGATAGTGATGTGTTCTTTGACTCGGTGGATTGTTTGTCACCTCCCCGAGAGACAAAACAACAAGAGTTTGGGTATGAGGTTTGGGTGAATGAGCCTCTCAGTGTGAAGGAAAGAAGGGAACGGTTTCTAAAGGGGGTGATGGGTTTGGCTGATGATGCTTCTAGTTCTAGTTCTAGTTCTACCAAGGCTTGTTCTCAAGAGGAAACTATGTGCTGTGATTTCTCATCACTCAACTTGGTGGGACTTGAGAGGATCACGGATGATTGCAATGGAGCAGTCTCAAATGCTGCTTGCAATTGCATTTTTCCTGCTGAACAAGTTCCTGAGGAGGAGTTGTCTCTCTTGAAATCGGAAGTCACTTCTGAACCGGATGCAAGTTTTCAAGGGAAGGTAGTACATGATGAGCTCTCATGTTCAAATCAAGAGCTAAGGCATAGNGAAGCTGAGGCTCTAGAAGAAGAATTTCAGGACGTTGATATGGGTAAAAAGAACAAGAAAAACTNGTGGAAGCAATTTGTAAAGAGTGGGAAAGGAAGTGTTGGGAAAGTCAGATCAAAATTGAATACAGGGACGAAGAAAACTCGTAGGATAAATGNAAGGCAGAATAAGAAGAGGTGGATGGAGTTCAGTGCGCTATATATTGGACAAGAGATTAGAGCACACAAAGGCTTGATTTGGACTATGAAATTTAGTCCCAATGGCCAGTATCTAGCTAGTGGAGGTGAAGATGGTGTTATCCGCATATGGCGCGTGTCATCGCTGAATGCTTCCAGTATTTGCTTCACTTCAGAAGACAGTGTCACTGGCAAAGTGAAACATGACATCTCTAGTTCTGGGAAGAAACACTCAAGTCAATCCTCCATTGTTCTTCCAAATAAGATTTTCAAAATTGAGGAATCCCCACTGCAAGAATTACATGGTCATTCCGGTGATGTGATTGATTTGGCTTGGTCTAATTCAGATATCCTTCTTTCCTCTTCTATGGATAAAACTGTTCGTATGTGGAAAATTGGCTCTGATCAATGCTTGAAAGTTTTNCGTCACAAAGATTACGTGACGTGCATTCAATTCAACCCCATCGATGAAAATTACTTCGTCAGTGGCTCCATAGATGGTAAAGTCCGAATATGGGGGGTACATGAAGAGAGAGTTGTTGACTGGGCAGACATACGCGATGTCATAAGTGCTGTAAGTTACCAGCCGGATGGAAAGGGCTTTGTAGTTGGTTCCCTTTCTGGCACTTGCCGCGTTTATGTTNCTTCAGGCAAACATTTCCAGCTTGAGGCACAGATTCGTATTGGTGGAAAGAAGAGAACATCTGGAAACAAAATTACTGGCATTCAGTTTTCCCGGAAGAACCATCACAGAGTTATGATCACATCAGAGGATTCCAAAGTTAGAATATTGGAAGGTGTTGAACTTGTTCAGACATATAAAGGCCTTCCAAAGTCAGGAAGTCAGATGTCTGGTTCATTTACACCAAGTGGAAAACACATAATTTCAGTTGGAGATGACTCTCGTGTGTATATTTGGAACTTCAATGACTTGGGAAATGCTTCTTCCAAACAGACAAAATCCGAGCATTCTTGTGAGTACTTTTGCTCCGAGGGGGTCACCGTTGCGATACCTTGGTCAGGCACGAGTGCGGAACAAAGGGGCCCTCGCGACGATTTTTCCAGCTATTCTCCCGAAAAGCAACACCAATTAGAGGCTGCTCNTGGGGTTAGAGAGTCGGAACGTTTTTCTTTTGGCAGTTGGTTCTCAATCNATGGTACGTGCCGAGGCTCTATGACGTGGCCTGAGGAGAAGCTTCCCAGTTGGGATTTACCTCTTGCAGAAGTTGAATTTGGTCACCAGAAGCTCTGTCTCAAGGATCCATGGCATGACAGTTGTGTGCCAGAAACATGGGGACTATCAATTGTTGCAGCTGGTTGTGATGGAACCATCAAGACATTTCACAACTTTGGNTTGCCTGTTAGGATTTAGGACTCTCAAAATCAAAGCTCTATTGATTTTGCCTTTCCATGATGCCTTTGCTTGGTAAAAGTGGACACATTCATAAAGGAGTTTCAAGGCCTTGGATTTTCAGTATATCTTGCAAGAAATTTGAAGCATGGAGTTAGATGATCT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01419	34574	38335	-

Gene family

Gene family	subfamily
Ubiquitin Family	DWD

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0005515 protein binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001419s00035735.1	PF00400.27	WD40	224	256	5.60E-10
Glyur001419s00035735.1	PF00400.27	WD40	308	343	2.70E-08
Glyur001419s00035735.1	PF00400.27	WD40	355	384	8.50E-07
Glyur001419s00035735.1	PF00400.27	WD40	498	519	0.033

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	1.208
SRR1783600	control	1.178
SRR1783602	moderate drought stress	1.416
SRR1811619	moderate drought stress	1.363

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	5.404
DRR006520	Root Summer glycyrrhizin high producing strain	5.134
DRR006521	Root Winter glycyrrhizin high producing strain	2.145
DRR006522	Root Winter glycyrrhizin high producing strain	2.131
DRR006523	Root Summer glycyrrhizin low producing strain	2.262
DRR006524	Root Summer glycyrrhizin low producing strain	2.121
DRR006525	Leaf Summer glycyrrhizin high producing strain	3.436
DRR006526	Leaf Summer glycyrrhizin high producing strain	3.442

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	11.288
SRR2868004	Drought Stress (root)	9.586
SRR2967015	Control (root)	13.024

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	3.158
SRR9715740	Leaf	6.965
SRR9715741	Leaf	2.982
SRR9715739	Root	0.505
SRR9715742	Root	3.093
SRR9715743	Root	3.436

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	1.454
SRR8749028	MeJA induced 9h	0.689
SRR8749029	MeJA induced 9h	0.336
SRR8749030	Uninduced	0.609
SRR8749031	Uninduced	0.249
SRR8749032	Uninduced	0.047

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	8.059
SRR8400027	Control - Root	10.011