Gene detail

Gene detail information of Glyur001419s00035731

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G09770.1	7.00E-70	Ribosomal protein L17 family protein
NR	XP_007137704.1	5.75E-104	hypothetical protein PHAVU_009G148700g [Phaseolus vulgaris]
COG	YP_864798.1	5.00E-36	50S ribosomal protein L17 [Magnetococcus marinus MC-1]
Swissprot	tr\|O80363\|RK17_TOBAC	1.00E-27	50S ribosomal protein L17, chloroplastic (Precursor)
trEMBL	tr\|V7AYM0\|V7AYM0_PHAVU	2.00E-104	Uncharacterized protein {ECO:0000313\|EMBL:ESW09698.1}

Sequence

Transcript Sequence

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01419	12333	14035	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006412 translation

cellular_component

GO:0005622 intracellular

GO:0005840 ribosome

molecular_function
GO:0003735 structural constituent of ribosome

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Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001419s00035731.1	PF01196.14	Ribosomal_L17	17	113	8.30E-33

Expression pattern

SRA Experiment	Description	TPM
SRR1783599	control	94.458
SRR1783600	control	94.712
SRR1783602	moderate drought stress	165.260
SRR1811619	moderate drought stress	164.481

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	117.392
DRR006520	Root Summer glycyrrhizin high producing strain	116.308
DRR006521	Root Winter glycyrrhizin high producing strain	90.859
DRR006522	Root Winter glycyrrhizin high producing strain	88.873
DRR006523	Root Summer glycyrrhizin low producing strain	100.667
DRR006524	Root Summer glycyrrhizin low producing strain	100.334
DRR006525	Leaf Summer glycyrrhizin high producing strain	25.937
DRR006526	Leaf Summer glycyrrhizin high producing strain	25.864

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	54.600
SRR2868004	Drought Stress (root)	46.603
SRR2967015	Control (root)	56.396

SRA Experiment	Description	TPM
SRR9715738	Leaf	27.086
SRR9715740	Leaf	37.828
SRR9715741	Leaf	34.858
SRR9715739	Root	82.549
SRR9715742	Root	61.654
SRR9715743	Root	62.773

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	87.073
SRR8749028	MeJA induced 9h	44.924
SRR8749029	MeJA induced 9h	64.288
SRR8749030	Uninduced	13.673
SRR8749031	Uninduced	4.065
SRR8749032	Uninduced	19.537

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	71.520
SRR8400027	Control - Root	61.761