Gene detail

Gene detail information of Glyur001418s00033592.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G78530.1	4.00E-136	Protein kinase superfamily protein
NR	KEH38485.1	0	receptor-like kinase [Medicago truncatula]
COG	YP_001958461.1	2.00E-23	hypothetical protein Aasi_1443 [Candidatus Amoebophilus asiaticus 5a2]
Swissprot	tr\|Q9SYM9\|Y1853_ARATH	4.00E-170	Receptor-like serine/threonine-protein kinase At1g78530
trEMBL	tr\|A0A072VK19\|A0A072VK19_MEDTR	0	Receptor-like kinase {ECO:0000313\|EMBL:KEH38485.1}

Sequence

Transcript Sequence

>Glyur001418s00033592.1
NTGTCTTAAATTTGGGCTCCACCATTCCAGGGTGTAGTTTCCAATAGACAATTAATTTTGAACATTCCATGCTTGTTTCTCTCCGCTGATGTTTTGACAAGTTAAAGATGTTTAAAACTAGATCATTTACCTGAATGATTTGAGAATTTGGGTTCATGACAGAAAGTGAAGTTGTGAACATTTACAGTGAACAAAGCTTGCATAACTTCTGTAGAATCCAGTGTGTGAAGATGGCATCTATTTTCATCTTCAGAAGCATCCATGGATACCAGATATTGGACATTTGAAGTGATTTCTTCTTAGAAATCAGAATATTACAAAATACTACTGCACTTACTCTGAGTTTTTCCCCTCCTTTCTTTATATGACGTTTGTTTCAGTTTAAAAGAAGAAGAAAAAAATGCTAGTTTTGCACACTTCCTGCAGCAATCTTTCAATTTGTCCTCATAGTTTATATTCTGCATGTGTTTAGATCATGAGAAAAGTCCTGAGCCAATCCTTGGTTTTCATTCGTTATTTTAATGTGCAAAACTTCAGGTTCTTAAAATTTCAGCATCATCAGTTTATGGCACTAAATGACGAATTCCCTCGTTATAGCCTTGTCCATAACTATATGCTTCATTGCTTTTGTCATATCCAAGATTTTTATAGCAGTCCTCCTCTACAAAAGATGGAGAAGAAAGCATGTGATTCATGAAGGAGGTTATACAGGTATGGTGATAATCCTTCGAATTATTACTTACCACGATCCGGTACACTTGCTGTGGTTAAGTCACATGGAGTGTCTCCTACTTTTTTGTTCTCAAAGAGAGAAAATAAAATAAGACATACTAACATACATTGGTTGGATCATGATGATACAGGAGGGAAGATGGTGATATTTAAGTCTTCAGTGCTTAAATCTCTCACATCTGATATGGTCTTGAAGGAGACACAGAAACTGAACAGCAAGGACATCATTGGGTCTGGTGGTTATGGTGTGGTTTATGAACTAAAACTGAATGACTCCACAGCCTTTGCTGTGAAAAGGCTAAACCGTGGAACCCCAGAGAGAGATAGAGGTTTTGAGAGAGAGTTGGAAGCAATGGCAGACATAAAACACCGCAACATTGTGACCCTTCATGGATATTACACTGCACCACACTACAATCTTCTCTTATATGAGTTAATGCCTAATGGAAGTTTGGATTCCCTTTTGCATGGGAGATCAATGGACAAGAAGGTCACTTTGGATTGGCCAACCAGATATAGAATAGCTGTAGGTGCAGCTAGAGGAATATCATATCTTCACCATGATTGCATCCCTCACATTATCCACAGAGACATCAAGTCAAGTAACATTCTGCTGGATCAAAACATGGAGGCCCGAGTATCAGATTTTGGATTAGCCACATTGATGGAACCAAACAAAACTCATGTTTCAACAATTGTGGCTGGAACTTTTGGATACTTGGCGCCTGAATATTTTGATACAGGAAGAGCAACAGTCAAAGGGGATGTTTACAGCTTTGGAGTTGTGTTACTGGAGCTTTTGACTGGGAAAAAACCAAGTGATGAAGCATTTATGGAAGAGGGAACCAAGCTTGTCACTTGGGTGAAGGCTGTTGTTCAAGAGAAGAAGGAAGAGTTAGTTCTTGATAGTAGCTTAGGGTCTTGCCCGAAGCAAGAGGTCAACAAGGTGTTCAACATTGCAATGATGTGTCTTGAACCAGATCCCTTGAATAGGCCAACCATGGCTGAGGTTGTCAACTTGCTTGAGCAAACAGAACCAGACAAACCTGTTACAGCATCATGATGTTCACTTAAAAACACTCACTCTGAAGCTTCTGGAAAACCATCCTACCAGATGTGGCAGTGGAGCTAGACATCGAAATTAATGTTGTTTGGGGAGGCCATACTCAACAACAACAAAAGCCGTTTTGCTCCTGAGCGGGGCAAGCCACGCTCAAGAGGGGGAAAAAACAAGAGTTTTGAAAAAATATGAGGGGGCCTTGAGATAGAAGAGGAGCTGCCCCTGCCTACCAGCTTCAACAAAATTTTCTGTGATTATAAAAGGGACAATTAAAGGGACAGAGAGATGTTAATATGCACTTGACATGATTACATTCCAATCAACCAAGTCGAATATGCCAGGACAGGGCAGGACTTAGACTAGGACAAAGTAGAAGTAGATGTAGCTTTGGTCTGCTAAGCACATGTATGAAGTGATACTATTGAACTGAACTAATTACTGGAAAATTGTTTCTATTCTAAGAGAAATAGTACATCAGAATTACTCAACTTTGCATGTAAAATTGTTCTGTTATTGGCCAAATCAAATATTTTGGATAGCTAGAAAATAAATACTAGAACCAAGTGACAGCTTACAATTGTACATAAGGCATGCATCGTTGGACGATAGAGCTTGATTACATAGACATAGATACCAGGAGAAAATAGGCTGCAGTAGTACATTCAAGGATTGAACCATTTCAAGAAAACATGGGTGTAAGAAATTTTCCCAATTGACACTGAAACTTTTTTCTACTTGAGTACTTTTGACAAGCCTTCAGCTACTGAAGCTTTCAAGGAGGGAGAAACGGGACAATCTCCAAGGAATACATCAAAAAGAGCATAAGTCACATTTGCAGATTCAATTGTAGCATCCACAGTAGATGGAACCCCATGTGAGGAGACAGAAACCTGAAATCACAAAAAAATTAGTTGGAAATCCCTGTCTTGTAAGATAGCAAAGGTGAAGAGGAGGGAATATAATAGACATAAAACGATCACAATTGTATGAACAAAAGATTTATATGACAAATTCAGCAATCCGTAGGAAATAGAAGCAGAAAACAAACTTACAAGCAATCTGGAGGGGTTCAACCAAGTCAAAAAAATCAAAGCTCCTTTCTTAAGGGGGCGGTCTAGAAAGACACCACGGAAAGTGCTCAAAGCAGTTTCATCTGCAGTTGTGGGATCTGAAATTCTTGGTGATATGGCATCACTCAAGGCATCCCAGAAAGTTTTACCATCAACATCTCTGACAAGAATAATTTGCAATAATTTCTCAAGGGAAGCTGCAATGAAATAAAGGCACATTTTATCAACTTACTCCCTAAATGTATCTGTGAGTATGACTATGTGAGAGCGTTGTCAAAAGAAATTATTAAAGTTGTTACATTGGAAAATGGTCTTGAACAAGGATGAATTCCCTTGAATCACATCTTTTGATTGCCCTTTCCAAGCATTCAATTCACTTGTAATGGATGAATTTAGATAGAGACCTGCAGCATAGACCTTGACACCAATAATGGCAAAAACTTT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01418	13403	17925	-

Gene family

Gene family	subfamily
Protein Kinases Family	PPC:1.12.2

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process

GO:0006468 protein phosphorylation

GO:0009966 regulation of signal transduction

molecular_function

GO:0004672 protein kinase activity

GO:0004674 protein serine/threonine kinase activity

GO:0005524 ATP binding

GO:0016772 transferase activity, transferring phosphorus-containing groups

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001418s00033592.1	PF00069.20	Pkinase	27	293	4.20E-49

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	9.921
SRR1783600	control	10.128
SRR1783602	moderate drought stress	11.533
SRR1811619	moderate drought stress	11.500

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	7.908
DRR006520	Root Summer glycyrrhizin high producing strain	7.897
DRR006521	Root Winter glycyrrhizin high producing strain	0.202
DRR006522	Root Winter glycyrrhizin high producing strain	0.198
DRR006523	Root Summer glycyrrhizin low producing strain	12.709
DRR006524	Root Summer glycyrrhizin low producing strain	11.922
DRR006525	Leaf Summer glycyrrhizin high producing strain	1.311
DRR006526	Leaf Summer glycyrrhizin high producing strain	1.440

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	2.543
SRR2868004	Drought Stress (root)	4.311
SRR2967015	Control (root)	3.380

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	1.795
SRR9715740	Leaf	1.865
SRR9715741	Leaf	1.135
SRR9715739	Root	0.390
SRR9715742	Root	2.765
SRR9715743	Root	2.800

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	1.777
SRR8749028	MeJA induced 9h	2.525
SRR8749029	MeJA induced 9h	1.216
SRR8749030	Uninduced	2.169
SRR8749031	Uninduced	0.249
SRR8749032	Uninduced	0.155

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	13.688
SRR8400027	Control - Root	19.730