Gene detail

Gene detail information of Glyur001418s00033591

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G53520.1	3.00E-73	Chalcone-flavanone isomerase family protein
NR	XP_004488681.1	1.77E-147	PREDICTED: chalcone--flavonone isomerase-like [Cicer arietinum]
Swissprot	tr\|Q9C8L2\|FAP3_ARATH	2.00E-94	Fatty-acid-binding protein 3
trEMBL	tr\|C6TC55\|C6TC55_SOYBN	3.00E-147	Chalcone-flavonone isomerase family protein {ECO:0000256\|RuleBase:RU361158}

Sequence

Transcript Sequence

>Glyur001418s00033591.1
TGGGGATGAACTTCTGGGAGGGATGAGACACGTGATTCACTCAAAGGGGTGTTCTAATCTTAGCCATTTATTTTAATCCAATGGTTATTATTTAATGCTCTCACCTCTCACAATAAAACACTCCTCTCACTTGATACGTCCCTTCGTTACAATATATCATATATCATGATGAAACATCAAAGCATAGTTAAGATTACGGCCGAAAAACCGAAGTGAGAGTAGTTCAGTTCAGTCGTCGTTGCTCCTCCATTCCAGCCACACATTCATCTGTTTCAATATTTTATTACACGACAATCCAACCTTAAAAAAAAATATGCTTGGAGCTGTCGCAGCTTCCACAACAACACTACGGTTTTCACCGTCCACCAAAACTATTCTTGTCCAACAAAGAATCCCAAATTCAACTCGTCCATTGAGCCATGCTCACTCTTTCTCACTCTTGTCATCTCCTCCTCTGCACTTCTCTCTCTACAAGAGCTGCAAAATACAACCCCATTTCTTTGCAGAAGCTGCATCTTCATCTTCTGCTGCAAATGCTGAATACATTGAGGAACCAGCAACAAATGTGAAATTCCAGACATCTTTGAGTTTTCCGGTTTGCTCAGATTCATTAACGTTGTTTGGAACTGGATACAGAGAGAAAGTTTTTGCCATTATTGGTGTCAAGGTCTATGCTGCAGGTCTCTATCTAAATTCATCCATTACAAGTGAATTGAATGCTTGGAAAGGGCAATCAAAAGATGTGATTCAAGGGAATTCATCCTTGTTCAAGACCATTTTCCAATCTTCCCTTGAGAAATTATTGCAAATTATTCTTGTCAGAGATGTTGATGGTAAAACTTTCTGGGATGCCTTGAGTGATGCCATATCACCAAGAATTTCAGATCCCACAACTGCAGATGAAACTGCTTTGAGCACTTTCCGTGGTGTCTTTCTAGACCGCCCCCTTAAGAAAGGAGCTTTGATTTTTTTGACTTGGTTGAACCCCTCCAGATTGCTTGTTTCTGTCTCCTCACATGGGGTTCCATCTACTGTGGATGCTACAATTGAATCTGCAAATGTGACTTATGCTCTTTTTGATGTATTCCTTGGAGATTGTCCCGTTTCTCCCTCCTTGAAAGCTTCAGTAGCTGAAGGCTTGTCAAAAGTACTCAAGTAG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01418	10500	14185	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0009813 flavonoid biosynthetic process

molecular_function

GO:0016872 intramolecular lyase activity

GO:0045430 chalcone isomerase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001418s00033591.1	PF02431.10	Chalcone	87	278	1.00E-50

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	4.101
SRR1783600	control	3.941
SRR1783602	moderate drought stress	2.049
SRR1811619	moderate drought stress	1.825

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	3.728
DRR006520	Root Summer glycyrrhizin high producing strain	4.117
DRR006521	Root Winter glycyrrhizin high producing strain	0.096
DRR006522	Root Winter glycyrrhizin high producing strain	0.094
DRR006523	Root Summer glycyrrhizin low producing strain	1.166
DRR006524	Root Summer glycyrrhizin low producing strain	1.185
DRR006525	Leaf Summer glycyrrhizin high producing strain	17.567
DRR006526	Leaf Summer glycyrrhizin high producing strain	17.527

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	3.765
SRR2868004	Drought Stress (root)	2.732
SRR2967015	Control (root)	2.134

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	9.574
SRR9715740	Leaf	5.863
SRR9715741	Leaf	6.730
SRR9715739	Root	0.471
SRR9715742	Root	1.027
SRR9715743	Root	1.220

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	2.263
SRR8749028	MeJA induced 9h	1.414
SRR8749029	MeJA induced 9h	0.966
SRR8749030	Uninduced	1.178
SRR8749031	Uninduced	0.432
SRR8749032	Uninduced	0.491

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	6.535
SRR8400027	Control - Root	6.431