Gene detail

Gene detail information of Glyur001417s00045110

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G13710.1	3.00E-179	cytochrome P450, family 78, subfamily A, polypeptide 5
NR	XP_004490206.1	0	PREDICTED: cytochrome P450 78A3-like [Cicer arietinum]
COG	YP_007126612.1	2.00E-28	Unspecific monooxygenase [Gloeocapsa sp. PCC 7428]
Swissprot	tr\|Q9LMX7\|C78A5_ARATH	0	Cytochrome P450 78A5
trEMBL	tr\|G7JZ14\|G7JZ14_MEDTR	0	Cytochrome P450 family protein {ECO:0000313\|EMBL:AES97093.1}

Sequence

Transcript Sequence

>Glyur001417s00045110.1
TTAAAAAAAAAAACTACCAAAAGCCAAAAGAAAATGTCACTAGAGTTTTTTCACCTTCTGTTTTTCCCTGACCTTGTTCACCCACCTATTCTCAGTCTCCAAGCTGCAATATGCGTCTTCCTGTTCACACTCGCCTTCCTATTCTGGCTGGCACCAGGCGGGCTCGCTTGGGCCCTGTGCAAGTCCTCCACCCGGGTCCAGGCCCAGGCCCGTTCCGTCATCCCGGGCCCATCGCTTTCCAGTGTCCTCGGGCTGTTCTCCGGCCCGACCCCACACCGAGTCCTGGCGAAACTCGCCCGGTCCCACCGTGCCGAGTCACTGATGGCCTTCTCCGTGGGCCTGACTCGGTTCATCATCTCTAGCGAANCGGAAACCGCCAAAGAGATTCTCTCCAGTTCGGCTTTCGGTGACAGACCCGTGAAGGAATCAGCCTACGAGCTTCTTTTCCACAGGGCAATGGGTTTCGCACCGTACGGAGAGTACTGGAGGAACCTGAGGAGAATCTCCTCCACCCACTTGTTCNGCCCGAAGAGAATCTCCTCCTTCGGAGCCTTCAGGCGCGATGTGGGACTTAAGATGGTGGCGCGAGTATGGCACTTGATGGCTGAAACTGGGCGCGTGGAGGTTAAAAAGGTGCTCCATTTCGGGTCCCTTAACAATGTGATGATGACGGTGTTTGGGAAGCGTTATGAGTTCTTCGATGGTGATGACGGTGCTGCTGAACTTGAAGAACTTGTGAGCGAAGGGTATGAGCTTTTGGGTGTGTTTAACTACAGCGATCATTTCCCTCTTCTCGGTTGGTTGGATTTGCAGGGAGTGAGAAAAAGATGCAGAGCTTTGGTTTCAAAGGTGAACGCTTTCGTTGGAAAGATCATAGAGGAACACAGAAGGAAGAGGGTCTCTGGTGAAAAGGGATGCACAGTTGGTGATTTCGTTGACGTGTTGCTTGATTTGGAAGGAAAAGACAAGCTCAGTGATTCTGATATGATTGCAGTTCTTTGGGAGATGATTTTTAGGGGGACTGACACGGTAGCGATTTTGCTGGAGTGGATTTTGGCGAGGATGGTGCTTCACCCTGAGATACAAGCGAAGGCGCAGGAAGAGATTGATGCTGTTGTTGGGAAATCGAGGGCTGTTTCTGATGAGGATNTTCCGAAGCTTCGATATTTGCAGTGCATTGTGAAGGAGGCTTTAAGGGTGCATCCACCTGGGCCACTCCTATCGTGGGCTCGTTTGGCCGTTCACGATGTTATTGTTGGTGGCAAGCTTGTGCCAGCTGGCACAACCGCCATGGTGAACATGTGGGCAATAACCCACGATGAGAAGGTTTGGGCAGAGCCAGAGGAGTTCAAGCCAGAGAGGTTCATGGAGGAAGAAGTGAGCATAATGGGTTCTGATTTGAGGCTTGCTCCATTTGGGTCTGGGAGAAGGGTGTGTCCTGGTAAGGCCATGGGTTTGGCCTCTATTCACCTCTGGCTTGCTCATTTGCTTCAGGGATTCAAATGGGTTCCCATTGATGATGATGACTCCACTGTTGACTTGTCTGAGTGCCTTAAACTCTCCATGGAGATGAAAACCCCACTGGTTTGCATGGTTATCCCTAGGGCTTGAGACCATGCTATGGTCATGGATCTTGGCTTTAATTTGTTTATTTTGCTAAGTTTAGTAAGTAGGGTTNAGATAATTATGAATTATGATTATGATAGTCTTTTTTCTTATTTTAAATCTATTCCTAAAATGCAGCTCCCTTATTAAGTTTGTGGACTGAAGTTAATGGTTTTATGGCAGGTTTTTTGGGGGACTAATTGTTAAGCTGTTTAGGGCAGTGGTGGTGAAGGACTTAAGGGTGTTGTTGGAAGTTTATATTTTACTAGTATTTTACTATGAGCTGGTACTCCTATTAAGTAAGGGTTTGGTGCATTTAT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01417	56375	58383	-

Gene family

Gene family	subfamily
Cytochrome P450 Family	CYP78A5

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0055114 oxidation-reduction process

molecular_function

GO:0005506 iron ion binding

GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen

GO:0020037 heme binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001417s00045110.1	PF00067.17	p450	77	501	6.30E-81

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	4.885
SRR1783600	control	4.829
SRR1783602	moderate drought stress	15.279
SRR1811619	moderate drought stress	15.350

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	37.886
DRR006520	Root Summer glycyrrhizin high producing strain	36.806
DRR006521	Root Winter glycyrrhizin high producing strain	0.465
DRR006522	Root Winter glycyrrhizin high producing strain	0.453
DRR006523	Root Summer glycyrrhizin low producing strain	48.906
DRR006524	Root Summer glycyrrhizin low producing strain	49.329
DRR006525	Leaf Summer glycyrrhizin high producing strain	19.433
DRR006526	Leaf Summer glycyrrhizin high producing strain	19.322

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	4.757
SRR2868004	Drought Stress (root)	4.382
SRR2967015	Control (root)	5.630

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	13.158
SRR9715740	Leaf	29.419
SRR9715741	Leaf	12.640
SRR9715739	Root	30.777
SRR9715742	Root	23.612
SRR9715743	Root	24.993

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	2.243
SRR8749028	MeJA induced 9h	6.870
SRR8749029	MeJA induced 9h	8.724
SRR8749030	Uninduced	6.961
SRR8749031	Uninduced	5.720
SRR8749032	Uninduced	5.620

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	3.032
SRR8400027	Control - Root	5.655