Gene detail

Gene detail information of Glyur001416s00028546.2

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G79230.1	4.00E-142	mercaptopyruvate sulfurtransferase 1
NR	AFK34139.1	0	unknown [Lotus japonicus]
COG	YP_002297378.1	5.00E-99	3-mercaptopyruvate sulfurtransferase [Rhodospirillum centenum SW]
Swissprot	tr\|O64530\|STR1_ARATH	0	Thiosulfate/3-mercaptopyruvate sulfurtransferase 1, mitochondrial (Precursor)
trEMBL	tr\|I3S1J7\|I3S1J7_LOTJA	0	Sulfurtransferase {ECO:0000256\|RuleBase:RU000507}

Sequence

Transcript Sequence

>Glyur001416s00028546.2
ACCTTTGCAAAATGTTACTTGAGCATTGATCAGCAAAGGCAGTGGCCACCTTCAGCTGCACAGACAGAAAGAGCATCACACATACTTNCTACTTTTGATTTTTGTTTCGGAACAACCTGCGACCCTTCGAGTTATCCGAGGCCACTCCTTTTTATATGGTCGCTGGTGAAAATGGGTTCGTCCCTTTTGACTAAGATGCTATNGGTTCCTCGCTCGATTCACCCTTCCTCCTTCCTCACTCACCGGCCACAAATCCTCTCTTCTCTATTCACTAAGCGGCTGTTCTGTAATCGAGCTGTTCCAGCCTATACAGCCCAAAACACCAAAGTGACTGGTTGGGCTCCTTGTATGGCTTCTTCAATAGTTGGTAGAATGGCTACGTATTCGACACAATCTGCATCTACAAATGAGCCTGTTGTTTCTGTGGATTGGCTTTATGATAACCTGAAGGAGCCTGATATTAAGGTACTGGATGCATCCTGGTACATGCCGGATGAACAGAGGAATCCAATTCAAGAATATCAGGTTGCTCACATTCCTGGGGCCCTTTTCTTTGATGTAGATGGAATAGCAGATCGAACTACAAAATTGCCACACATGTTGCCATCAGAGGAAGCTTTTGCTGCTGCTGTTTCTGCTCTTGGCATACAGAACAAAGATGACTTGGTTGTTTATGATGGCAAAGGAATATTTAGTGCAGCTCGTGTTTGGTGGATGTTCCGAGTGTTTGGGCATGATAGAGTTTGGGTATTAGATGGTGGCCTGCCAAGATGGCGTGCATCTGGTTATGATGTTGAATCTAGTGCTTCGAGTGATGCTATTCTTAAAGCTAGTGCTGCAAGCGAGGCAATAGAGAAAGCTGGTCCAATTACGTTTCAGACTAAATTTCAGCCACNTCTTGTTTGGACCCTTGATCAGGTAAAGAGAAATATAGAGGAAAAATCTCACCAACACATAGATGCTCGATCAAAGCCCAGGTTTNATGGAGCTGCACCAGAGCCCCGAAAGGGAATCAGAAGTGGTCATGTACCTGGCAGCAAATGCATTCCTTTTCCCCAGTTGTTAGATAGTTCACAGACATTGTTGCCGGCGGATGAGCTTAAGAAGCGGTTTGATCAAGAAGGCATCTCTTTGGAAAGCCCAGTTGTGACTTCGTGTGGAACTGGAGTAACTGCTTGCATTCTTGCATTGGTATTGCTCTCT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01416	55946	62456	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K01011	TST, MPST, sseA	EC:2.8.1.1 2.8.1.2	Sulfur metabolism	map00920
			Sulfur metabolism	map00920
			Cysteine and methionine metabolism	map00270
			Cysteine and methionine metabolism	map00270
			Sulfur relay system	map04122
			Sulfur relay system	map04122

Gene Ontology

molecular_function
GO:0004792 thiosulfate sulfurtransferase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001416s00028546.2	PF00581.15	Rhodanese	142	260	1.50E-15
Glyur001416s00028546.2	PF00581.15	Rhodanese	304	391	1.50E-07

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	79.249
SRR1783600	control	79.242
SRR1783602	moderate drought stress	79.905
SRR1811619	moderate drought stress	79.392

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	102.671
DRR006520	Root Summer glycyrrhizin high producing strain	101.874
DRR006521	Root Winter glycyrrhizin high producing strain	49.674
DRR006522	Root Winter glycyrrhizin high producing strain	48.339
DRR006523	Root Summer glycyrrhizin low producing strain	106.684
DRR006524	Root Summer glycyrrhizin low producing strain	106.338
DRR006525	Leaf Summer glycyrrhizin high producing strain	71.762
DRR006526	Leaf Summer glycyrrhizin high producing strain	70.710

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	92.388
SRR2868004	Drought Stress (root)	96.046
SRR2967015	Control (root)	85.939

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	74.037
SRR9715740	Leaf	93.521
SRR9715741	Leaf	88.014
SRR9715739	Root	52.852
SRR9715742	Root	69.284
SRR9715743	Root	67.101

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	83.077
SRR8749028	MeJA induced 9h	65.269
SRR8749029	MeJA induced 9h	72.734
SRR8749030	Uninduced	65.320
SRR8749031	Uninduced	35.690
SRR8749032	Uninduced	49.552

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	79.544
SRR8400027	Control - Root	77.413