Gene detail

Gene detail information of Glyur001416s00028542.2

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G16470.2	8.00E-118	proteasome subunit PAB1
NR	XP_006584581.1	1.32E-157	PREDICTED: uncharacterized protein LOC100799108 isoform X1 [Glycine max]
COG	NP_579300.1	4.00E-56	proteasome subunit alpha [Pyrococcus furiosus DSM 3638]
Swissprot	tr\|O23708\|PSA2A_ARATH	7.00E-149	Proteasome subunit alpha type-2-A
trEMBL	tr\|I3RZ63\|I3RZ63_LOTJA	6.00E-157	Proteasome subunit alpha type {ECO:0000256\|RuleBase:RU000551}

Sequence

Transcript Sequence

>Glyur001416s00028542.2
GCTACTCCTTCTGTCTCCCCACTTTATACACTCGGCACTTCAGAGAAGCAAACACTGTTACCCTTCGCGACCTCTCTCCCCTCTTTCTCTCCTCTTTCTCTTTCTCAGGNTATTGTAAGGTTTACCATGGGGGATAGTCAGTACTCATTTTCTCTTACCACATTTAGCCCTTCTGGAAAGCTTGTTCAGATTGAGCATGCTTTGACAGCTGTTGGTTCTGGACAAACTTCTCTTGGAATTAAAGCTGCAAATGGAGTTGTCATTGCAACAGAGAAGAAATTGCCATCAATTTTGGTTGATGAAGCATCAGAACCAATCCCTGTCACTCAACTTGTAAGGGAAGTTGCTGCCGTTATGCAGGAATTTACTCAGTCTGGTGGTGTTCGGCCTTTTGGAGTGTCCCTGCTGGTTGCTGGGTTTGATGACAATGGACCACAATTATATCAGGTGGATCCATCAGGTTCATATTTTTCTTGGAAAGCTTCTGCTATGGGAAAAAATGTTTCTAATGCAAAGACTTTTCTTGAGAAGAGGTACACAGATGATATGGAGCTTGATGATGCAGTCCACACAGCTATATTGACACTGAAGGAAGGGTTTGAGGGACAGATCTCAGCAAAAAACATTGAAATTGGCATAATTGGTGCGGACAAAAAGTTCAGGGTATTGACACCAGCCGAAATTGATGATTATTTGGGTGAAGTAGAATAATCTGCTTTGAAGAATCCTTATGTTCCCGAAGTTGGTGTTTGTTTCACAGTTGAGTTTAGTTGAATTTCAAGATGGATTACTTAAATGAAGACTGAGATGGCACTGACAAATTTGTGAGCTACTCACTCTTGTGGTAGCCCGCAAGCCTTTGAGAAAAAACCTTTTTCCAAAGCCATCACCATTACCATACAAACCTAGCTTGTTTAAATTATATGATATGACAATGACTTATAATGAACATTCTAATTTTTTGCCTTTTGTTATCTGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01416	29082	37783	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K02726	PSMA2	EC:3.4.25.1	Proteasome	map03050
			Proteasome	map03050

Gene Ontology

biological_process

GO:0006511 ubiquitin-dependent protein catabolic process

GO:0051603 proteolysis involved in cellular protein catabolic process

cellular_component

GO:0005839 proteasome core complex

GO:0019773 proteasome core complex, alpha-subunit complex

molecular_function

GO:0004175 endopeptidase activity

GO:0004298 threonine-type endopeptidase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001416s00028542.2	PF10584.4	Proteasome_A_N	48	70	6.10E-10
Glyur001416s00028542.2	PF00227.21	Proteasome	104	214	1.70E-36

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	40.814
SRR1783600	control	40.997
SRR1783602	moderate drought stress	42.543
SRR1811619	moderate drought stress	41.921

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	111.496
DRR006520	Root Summer glycyrrhizin high producing strain	109.365
DRR006521	Root Winter glycyrrhizin high producing strain	103.377
DRR006522	Root Winter glycyrrhizin high producing strain	99.378
DRR006523	Root Summer glycyrrhizin low producing strain	84.296
DRR006524	Root Summer glycyrrhizin low producing strain	84.876
DRR006525	Leaf Summer glycyrrhizin high producing strain	51.302
DRR006526	Leaf Summer glycyrrhizin high producing strain	49.976

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	189.329
SRR2868004	Drought Stress (root)	170.812
SRR2967015	Control (root)	128.983

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	105.660
SRR9715740	Leaf	122.506
SRR9715741	Leaf	120.421
SRR9715739	Root	91.051
SRR9715742	Root	88.712
SRR9715743	Root	88.439

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	207.313
SRR8749028	MeJA induced 9h	167.624
SRR8749029	MeJA induced 9h	165.586
SRR8749030	Uninduced	105.286
SRR8749031	Uninduced	69.557
SRR8749032	Uninduced	78.650

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	166.366
SRR8400027	Control - Root	166.403