Gene detail

Gene detail information of Glyur001416s00028539.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G33870.1	5.00E-55	Peroxidase superfamily protein
NR	XP_004488796.1	0	PREDICTED: putative Peroxidase 48-like [Cicer arietinum]
Swissprot	tr\|O81755\|PER48_ARATH	9.00E-66	Putative Peroxidase 48 (Precursor)
trEMBL	tr\|K7L767\|K7L767_SOYBN	5.00E-176	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA08G17850.2}

Sequence

Transcript Sequence

>Glyur001416s00028539.1
ATGCGGAGCTGCTTGAACGCGTGGGTAGTGGTAGCACTGGTGGTGGTGCCGGTGCTTCTCTCTCTGAGGAACCCACGAGGTGAACCCGAGAACAACACTGAAACCGAAACAGAAACCGAAACCACTTCACCTTCTTCTTTCTCCGACTCTTACGACTTCACGGTGAAGCTTGCCAATAGTAACACCAATTTTCCCTTCAACCAGAGGATCAGAGACGGTTCCAACCTTGAGTATGATTTTTATAGGGAAAGTTGCCCTCGGGCTGAGGACACTGTTCGTTCCGCCGTCACTCGAATCTACTTTGATCAAAGAGACGTTTCCCCTGCTCTTCTCCGTCTCTTCTTCCATGATTGCTTCATCCAGGGCTGTGATGCTTCATTGCTGTTAGATGTTAATGGTGACAGAAACCGTTCCGTTGAGAAGCAGGCCGTTCCAAATCAGACCTTGAGAGGTTTTGAACAAATTGANTTGATTAAGGAGGAGGTGGAACAAGCATGTCCCGGGGTTGTCTCTTGTGCTGACATACTTGCTCTTGCTGCAAGAGATTCCGTTCTTCTGCAAGAGATTCTGGCTGTTAATAGAGGACACAACATTGGCAAAATTGGCTGTGATTTCATTCAGCAAAGGCTGTACAACTTCCAGGGCACAGGGCAGCCAGACCCCACCATACCACTTGATTTCCTTCGTCAGATGAGGCTAAACTGCCCAGACAAGAGGAACAACATCAGCAGCAGCAGCACCGATGAGTTCTCCGAATCCGCGATTTCGAGGCCAGCAAGTGTGAGTGTTCACTCTGACCAAGGGATGTCATANATGCAGGCACTGTCAACTTCAGTGTCATCTGGAGCAGCATTTGACACTCACTACTACCAGAGTTTGCTGAGAGGAAGAGGGNTGCTGTTTGCTGATCAGCAGCTCATGGCTCAGGAGAAGACTGCAAGGTTGGTTTCTGCTTATGCCTCAGATGATGGATCAACCTTCCGCATGGACTTTGCAAGGGTTATGTTGAAGATGTCAAACCTTGATGTTTTGACTGGAACTCAAGGTCAGGTTCGGATGAATTGCTCCCAACTTATAAGCTCTTAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01416	14619	17348	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K00430	E1.11.1.7	EC:1.11.1.7	Phenylpropanoid biosynthesis	map00940

Gene Ontology

biological_process

GO:0006979 response to oxidative stress

GO:0055114 oxidation-reduction process

molecular_function

GO:0004601 peroxidase activity

GO:0020037 heme binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001416s00028539.1	PF00141.18	peroxidase	92	185	1.50E-25
Glyur001416s00028539.1	PF00141.18	peroxidase	188	322	7.50E-11

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.067
SRR1783600	control	0.099
SRR1783602	moderate drought stress	0.077
SRR1811619	moderate drought stress	0.099

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.071
DRR006520	Root Summer glycyrrhizin high producing strain	0.098
DRR006521	Root Winter glycyrrhizin high producing strain	0.203
DRR006522	Root Winter glycyrrhizin high producing strain	0.398
DRR006523	Root Summer glycyrrhizin low producing strain	0.509
DRR006524	Root Summer glycyrrhizin low producing strain	0.740
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.145
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.099

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	0.078
SRR2868004	Drought Stress (root)	0.046
SRR2967015	Control (root)	0.036

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.019
SRR9715740	Leaf	0.000
SRR9715741	Leaf	0.140
SRR9715739	Root	0.000
SRR9715742	Root	0.124
SRR9715743	Root	0.000

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.018
SRR8749028	MeJA induced 9h	0.044
SRR8749029	MeJA induced 9h	0.058
SRR8749030	Uninduced	0.018
SRR8749031	Uninduced	0.000
SRR8749032	Uninduced	0.000

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	0.162
SRR8400027	Control - Root	0.053