Gene detail

Gene detail information of Glyur001415s00034559

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G21410.1	8.00E-146	cysteine-rich RLK (RECEPTOR-like protein kinase) 29
NR	XP_003615455.1	0	Cysteine-rich receptor-like protein kinase [Medicago truncatula]
COG	YP_001958461.1	2.00E-18	hypothetical protein Aasi_1443 [Candidatus Amoebophilus asiaticus 5a2]
Swissprot	tr\|Q8S9L6\|CRK29_ARATH	0	Cysteine-rich receptor-like protein kinase 29 (Precursor)
trEMBL	tr\|G7KDB1\|G7KDB1_MEDTR	0	Cysteine-rich receptor-kinase-like protein {ECO:0000313\|EMBL:AES98413.1}

Sequence

Transcript Sequence

>Glyur001415s00034559.1
ATGGCCTTGTCGGTGAATCCCCCTGAGCCGAGACGAGTCGAATACCCGACTTGGATAAATCTGACTGGCAGATCTATTTCTGATTTGCCGGTCGCTCAATGGTGTGAGGTTGGAAAAGTCTCCTTGGAGCACTACACCGGGTTGCTTCCGGCTTTGGAGGCGCTTATAGGTGTTGAACAAAGCGACAATGGCAACTACACAGCGAACAGCACCTACCACAACAACCTCAAAACCCTCTTATATTCCACCCTCACCTCCAACACAAAAATCGACTACGGTTTCTACAATTCCTCGTACGGTAAAAACACCGACGACACAGCATACGCCATTGGATTCTGCAGAGGTGACGTTAACACTAACGATTGCCGTAACTGCCTCAACCAGTCAACAACCCTTCTGTTACAAAACTGTCCCAATCAGAAAGAGGCGATTGGGTGGTTGGGCAACTGCATGATTCGATACTCAAACCGCTCCATATTTAACCTCATGGAAACGTTTCCGTACATGTATTTTTGGAACACGAACAACGCGACGGGGGTGGATGAGTATAACAAGGTACTGGGGAATTTGTTGTCTGGGTTGAGGAACACGGCTTCGGGTGGGGACGCGCGTAAGAAGTACGCGACGGGGCATGCGCATGATCCGAATTTTCAGGATATTTATGGGCTCATGCAGTGTACGCCTGATATTGATGAGCTCAGGTGCGATGAGTGCTTCGGTGAGACAATTGCGGGTCTTCCCTCTTGTTGTGATGATTCGATTGGTGCTAGAGTTATTAGGCCAAGTTGTATTGTTAGATATGAGAACTACAAATTCTATGAAGTCACTGCGGCGGAAGCACCACCACCTTCGCCACCGTCCACCAATAACACTTCCTCAGGAGGAAAGAGCAATACATCAAAAACTGCCATCGCCATAGCAATCCCAGTTGCTGTTGTTGCTTTGGTGCTCTGTTTCCTCTGCATCTATTTACGGGTGAAGAAGAAGAAGAAGAAGAGAGAAAATTTTCAAATTTCTATAGTTCCTTCAGAAGATGATGATGAAATTATAACCGGTGAATCATTGCAATTCAACTTTGACACTATACGAGTTGCTACAAATGACTTCTCTGATTCCAATAAACTTGGAGAAGGTGGATTTGGAGCTGTTTACTGGGGTAGGCTCTCTAATGGACAAGTAATTGCTGTGAAAAGGTTGTCAATGAACTCTGGCCAGGGAGATTTGGAATTTAAGAATGAAGTGCTTTTAGTGCCCAAGCTTCAACACCGAAATTTAGTTAGGCTACTTGGTTTTAGTCTTGAAGGAAGAGAAAGACTACTTGTCTATGAATTTGTCCCTAATAAAAGTCTTGACTACTTCATATTTGATCCAACAAAGAAAGCACAATTGGAATGGGAAAAGCGTTACAAAATCATTGGAGGTATTGCTCGAGGCCTTCTTTACCTTCATGAGGATTCACGTCTACGCATTATACATCGTGATCTTAAAGCAAGCAATATTCTCTTAGATGAAGAGATGAATCCTAAGATATCCGATTTTGGCATGGCAAGACTGATTATTTGGATATATGGCACCCGAATATGTAATGCATGGACAGTTTTCAGTGAAATCTCAGATGTCTTTAGTTTTGGTGTATTGGTTCTTGAGATTGTAAGCGGCCAAAAAAATAGTGGCATTCGTCATGGGACAAGTGTGGAGGATCTATTGAGCTTCGCATGGAGAAACTGGAGGGAGGGGACAGCTAAAAATATTATAGATCGTTCACTGAACAACAGTTCACAAAATGAAATTATGAGATGCATCCATATTGGTTTACTCTGTGTTCAAGAAAATGTAGTTAACAGACCAACCATGGCTACCATTGCACTCATGCTAAATAGCTATTCTCTTACTCTCCCAATACCTTCAGAACCTGCATTTTTTGTGGATAATAGAACTGAAAGTCTTCCAAACATGCAGTACTCATGGGAAGATAATTCAGGGGCAACAAGATCAAGTGAATCCGCGACTAGGTCAGCTCGAGAATCAGTAAATGAGGCTTCAATTACAGAGCTATACCCTCGCTAG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01415	6537	13992	+

Gene family

Gene family	subfamily
Protein Kinases Family	PPC:1.7.2

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006468 protein phosphorylation

molecular_function

GO:0004672 protein kinase activity

GO:0005524 ATP binding

GO:0016772 transferase activity, transferring phosphorus-containing groups

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001415s00034559.1	PF01657.12	Stress-antifung	61	157	2.00E-22
Glyur001415s00034559.1	PF01657.12	Stress-antifung	175	272	4.60E-21
Glyur001415s00034559.1	PF07714.12	Pkinase_Tyr	372	622	1.00E-34

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.198
SRR1783600	control	0.168
SRR1783602	moderate drought stress	0.083
SRR1811619	moderate drought stress	0.161

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.104
DRR006520	Root Summer glycyrrhizin high producing strain	0.104
DRR006521	Root Winter glycyrrhizin high producing strain	0.008
DRR006522	Root Winter glycyrrhizin high producing strain	0.052
DRR006523	Root Summer glycyrrhizin low producing strain	0.053
DRR006524	Root Summer glycyrrhizin low producing strain	0.160
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.341
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.404

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	0.749
SRR2868004	Drought Stress (root)	1.686
SRR2967015	Control (root)	0.696

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	4.489
SRR9715740	Leaf	1.972
SRR9715741	Leaf	8.490
SRR9715739	Root	0.122
SRR9715742	Root	1.679
SRR9715743	Root	1.114

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.189
SRR8749028	MeJA induced 9h	0.448
SRR8749029	MeJA induced 9h	0.761
SRR8749030	Uninduced	1.972
SRR8749031	Uninduced	2.798
SRR8749032	Uninduced	0.979

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	0.552
SRR8400027	Control - Root	0.764