Gene detail

Gene detail information of Glyur001413s00028476

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G04880.1	2.00E-137	adenosine/AMP deaminase family protein
NR	AFK37590.1	0	unknown [Lotus japonicus]
COG	YP_001253522.1	1.00E-34	adenosine deaminase [Clostridium botulinum A str. ATCC 3502]
trEMBL	tr\|I3SBE8\|I3SBE8_LOTJA	0	Uncharacterized protein {ECO:0000313\|EMBL:AFK37590.1}

Sequence

Transcript Sequence

>Glyur001413s00028476.1
ATGGAGTGGTGTGTGTCAATGCCAAAGNTGGAACTGCATGCTCACCTCAATGGATCCATCAGAGACTCCACACTCCTAGAACTTGCCAAGGCTTTCACTGAAAAAAAGAGTGTCATAAATTTCTCCGAGGTGGAGCGTGTCATCCGTAAATGTGATCGTTCAGTAACAGAAGTATTCAACTTGTTTGACCTAATCCACATTCTCACTACTGATCATGACACTGTTACAAGAATTACAAGAGAAGTCGTTGAGGATTTTGCATCAGATAATGTTGTCTATCTGGAGTTGAGGACTACACCAAAGCGTAATGGTTCCATTGGAATGAGCAAACGCTCTTATGTTGAAGCTGTACTCAAAGGTCTAAGATCAGTGAGTTCAGTTGATGTGGATTTCATTCCACACGGTGAAGATTCTGAAACTCTTTATAATCATTTACCCGTGATTACCAATGATAAATGTAATGGAGATTCCAGAAAAAGAATCTTTGTTAGGCTTCTCTTGAGCATTGACCGCAGGGAGACAACAGAAGCGGCGGTGGAAACTGTTAAGCTTGCACTGGAAATGAGGCATTTAGGGGTGGTTGGAATTGATCTCTCTGGAAATCCAACTGTTGGTCAATGGACTACGTATTTGCCGGCACTGAAATTCGCTCGAGAACAAGGTCTTTGTGTAACACTTCACTGTGGAGAGGTACCTAATTCGAAGGAGATACATAATATGCTTGACTTTCATCCCCAAAGGATTGGACATGCTTGTTGCTTTGAGGATGAACATTGGAGAAAGCTCAAGTCCTCTAACATTCCGGTTGAAATTTGTTTGACATCAAACATTACGACATCGACGGTTCCATCTATAGGTGTTCATCATTTCTTTNATTTGTATAATGCAACACATCCTCTAGTCCTGTGCACCGACGACTCGGGTGTGTTCTCTACGCGTCTCTCCAAGGAATACGAACTTGCTGCTGATGCATTTGGGCTGGGAAGGAGGGAAATGTTTGAGCTATCAAGGAATGCTGTGGAGTATATATTTGCAGATAGTGGAGTGAAGGAGGATTTAAGAAAACTTTTTAATTCAGTGGCAAATGATATGAAAGTGTAACTACATTTTCATCTAAGAAGATCTTCATTTAGTTCATATGACTATATACCAGGTATTATTACAATGATATGGGACACAAGTTATAGCTCAATTTGATATTATAGATTAGCTAACAATCTTGGCAGGGTCTCACCCCTTATCCTAGATTGAAATTTGAAGCTGGTCCCTGATAAAATTATTCATTCAAGTGTTTTCTTCAAGGAGATTTTAATTGTTGAGCCATTCCACTGCAATTTCATATTATGGTCAAGTCA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01413	68374	71955	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0019239 deaminase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001413s00028476.1	PF00962.17	A_deaminase	7	125	1.60E-11
Glyur001413s00028476.1	PF00962.17	A_deaminase	170	353	2.30E-29

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.107
SRR1783600	control	0.054
SRR1783602	moderate drought stress	0.028
SRR1811619	moderate drought stress	0.028

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.399
DRR006520	Root Summer glycyrrhizin high producing strain	0.396
DRR006521	Root Winter glycyrrhizin high producing strain	4.515
DRR006522	Root Winter glycyrrhizin high producing strain	4.432
DRR006523	Root Summer glycyrrhizin low producing strain	0.183
DRR006524	Root Summer glycyrrhizin low producing strain	0.194
DRR006525	Leaf Summer glycyrrhizin high producing strain	17.186
DRR006526	Leaf Summer glycyrrhizin high producing strain	17.932

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	2.567
SRR2868004	Drought Stress (root)	2.226
SRR2967015	Control (root)	3.111

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	52.315
SRR9715740	Leaf	33.833
SRR9715741	Leaf	42.487
SRR9715739	Root	0.255
SRR9715742	Root	1.722
SRR9715743	Root	2.082

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	180.736
SRR8749028	MeJA induced 9h	285.434
SRR8749029	MeJA induced 9h	171.217
SRR8749030	Uninduced	50.621
SRR8749031	Uninduced	13.756
SRR8749032	Uninduced	48.576

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	0.892
SRR8400027	Control - Root	3.544