Gene detail

Gene detail information of Glyur001413s00028474.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G04870.1	3.00E-88	cardiolipin synthase
NR	XP_004486123.1	0	PREDICTED: cardiolipin synthase-like [Cicer arietinum]
COG	YP_002297765.1	2.00E-22	CDP-alcohol phosphatidyltransferase [Rhodospirillum centenum SW]
Swissprot	tr\|Q93YW7\|CLS_ARATH	1.00E-123	Cardiolipin synthase, mitochondrial (Precursor)
trEMBL	tr\|A0A072VFA4\|A0A072VFA4_MEDTR	1.00E-169	Phosphatidylglycerolphosphate synthase {ECO:0000313\|EMBL:KEH36825.1}

Sequence

Transcript Sequence

>Glyur001413s00028474.1
AAAAAAAAAAAAAAACAGTGCGAGAGAGACAGAAGAAAAACCTAATTGCTGTTGGACGTTAAACTAGTGGAATTGGAAGAAGAAGAAGAAGAAGAAATGCTTCAGAAATGGTGATCTTCAGGTCCCTCAAATCAATACTCACCAACACCAACACCAACACCAACACCATCATAGCTCGAACCTGCCTCACCTCAACAACAACAGCAACAATCACAGCTACCTTCTTCCCATTGCACAACGCGCTTTTTCGCTTTCCCTCTCACAACGGCCCTCTCTTCCTCGCTTCCCCACCCTGGAAGCTCTCTCAATCCGCAACCCCTCTCTATTTCCACCCAAACGCCGTCGTTTTCCGCAACAAGGTCAACGCCATCAATCTCAAATTGCTTCGGGTCACAACAACCCCTTTACCCCTCCACCTGCAACACCGGGTCGATTCCGATTCCAACCACTCTCCTCAACACACGCTTCTCCACACTTTCCTCAATGCGCCTAATCTCATATCTATTACCCGGTTAATCTCGGGTCCAGTCCTTGGATGGATGATCTCGAACGATATGTATACTTCAGCAATGGTGGGGTTGGCCATCTCTGGAGGGTCTGATTGGCTGGATGGGTACGTGGCTAGGAAGATGAAGATTGATTCTGTAGTGGGTTCCTACCTTGATCCCCTTGCTGATAAGGTTCTTATTGGTTGTGTTGCTGTTGCAATGGTTCATAAAGATCTACTGCATCCTGGACTTGTTGGACTCGTTGTGTTCCGAGATGTCTTCCTCATTGGGGGTGCAATATTTCAAAGAGCAAGTAGCTTGGGCTGGAAGTGGAAAAGCTGGTTTGANTTTTTCAACCTTGATGGGACCCGTCGCCAAAAGGTCGAACCACTCTTTATAAGCAAGGTGAATACGGTGTTCCAGTTAGCATTAGTTGCTGCAGCTCTTCTTCAACCCGATTTTGGAACCCAAGAAACTCAATCGTACATTGATTATCTGAGCTGGTTAGTGGCTTCAACAACAGTGGCATCTAGTGCAGCATATGGTGTAAAATATATGAGATCTGCAGTTGTATTAAAGTCAGCCTAGATGAAGTTACGTAGAATGAAGCACCATGGAGCAAGTTCAAGTGGGGATTTGAGCAGTACTTTTAACAGGCAAATAGATGATTACATATCAGCATATTTACTTACACATTCAAAAATAGTTGCAGTATCAGAAAAAGATAAAAGAGAAAATTACNTTTAAAGACTTGTTCCATCAAATTGATAATAGTTTTTTTTAACTTATGATGCACGTAAGGGTGTTTCAAAATTCACATTAAAAGTTATTCGCGACTAATACATTCAATTAGAGATGTGAAACTCAATGGAGTAAAGCTCATGGCTGACCTATTTCCCCCTGTTGGGTGGGTTTGGCTACCATTTTTTTTGGGGTCAAAGGATCGACAGATCCATCATTAAAAAAGGTGGGCAAGCCTCATAACTACAAGGCATAAACGCCCAACAACCAGGCACAGCCTGTCAAACATTAGCATAAGCCGAAACAACATAAAGAAAAACATTTAGCACATGAAATGCTGCTAACTCTCCAGCTTCTGATCAAAGACCCTCATACGGAAACCACAAACCAAGGAGTACAACCTTTCGAATCCAGACTCTGCAAACAAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01413	54394	57392	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K08744	CRLS	EC:2.7.8.41	Glycerophospholipid metabolism	map00564

Gene Ontology

biological_process
GO:0008654 phospholipid biosynthetic process

cellular_component
GO:0016020 membrane

molecular_function
GO:0016780 phosphotransferase activity, for other substituted phosphate groups

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001413s00028474.1	PF01066.16	CDP-OH_P_transf	124	208	1.40E-16

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	17.448
SRR1783600	control	17.016
SRR1783602	moderate drought stress	16.958
SRR1811619	moderate drought stress	16.457

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	16.466
DRR006520	Root Summer glycyrrhizin high producing strain	16.666
DRR006521	Root Winter glycyrrhizin high producing strain	17.926
DRR006522	Root Winter glycyrrhizin high producing strain	17.407
DRR006523	Root Summer glycyrrhizin low producing strain	14.776
DRR006524	Root Summer glycyrrhizin low producing strain	14.649
DRR006525	Leaf Summer glycyrrhizin high producing strain	13.148
DRR006526	Leaf Summer glycyrrhizin high producing strain	12.840

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	22.023
SRR2868004	Drought Stress (root)	26.001
SRR2967015	Control (root)	24.845

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	15.690
SRR9715740	Leaf	20.050
SRR9715741	Leaf	19.082
SRR9715739	Root	4.847
SRR9715742	Root	11.982
SRR9715743	Root	10.206

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	36.343
SRR8749028	MeJA induced 9h	36.285
SRR8749029	MeJA induced 9h	35.070
SRR8749030	Uninduced	16.596
SRR8749031	Uninduced	12.651
SRR8749032	Uninduced	19.099

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	22.677
SRR8400027	Control - Root	20.053