Gene detail information of Glyur001413s00028472 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G61870.1 | 1.00E-114 | pentatricopeptide repeat 336 |
| NR | XP_004486122.1 | 0 | PREDICTED: pentatricopeptide repeat-containing protein At1g61870, mitochondrial-like [Cicer arietinum] |
| Swissprot | tr|Q8LE47|PPR87_ARATH | 8.00E-158 | Pentatricopeptide repeat-containing protein At1g61870, mitochondrial (Precursor) |
| trEMBL | tr|I1MFG1|I1MFG1_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA15G11340.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01413 | 47331 | 48828 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001413s00028472.1 | PF13041.1 | PPR_2 | 227 | 275 | 4.90E-10 |
| Glyur001413s00028472.1 | PF01535.15 | PPR | 301 | 330 | 0.00067 |
| Glyur001413s00028472.1 | PF13041.1 | PPR_2 | 333 | 381 | 7.10E-11 |
| Glyur001413s00028472.1 | PF01535.15 | PPR | 411 | 434 | 0.33 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 18.653 |
| SRR1783600 | control | 18.301 |
| SRR1783602 | moderate drought stress | 15.052 |
| SRR1811619 | moderate drought stress | 14.450 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 19.493 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 18.035 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 5.004 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 4.903 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 23.589 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 23.825 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 8.613 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 8.892 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 17.317 |
| SRR2868004 | Drought Stress (root) | 11.224 |
| SRR2967015 | Control (root) | 10.496 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 6.211 |
| SRR9715740 | Leaf | 6.814 |
| SRR9715741 | Leaf | 4.315 |
| SRR9715739 | Root | 21.462 |
| SRR9715742 | Root | 24.007 |
| SRR9715743 | Root | 22.455 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 30.638 |
| SRR8749028 | MeJA induced 9h | 22.208 |
| SRR8749029 | MeJA induced 9h | 18.288 |
| SRR8749030 | Uninduced | 3.233 |
| SRR8749031 | Uninduced | 1.058 |
| SRR8749032 | Uninduced | 1.678 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 14.408 |
| SRR8400027 | Control - Root | 12.728 |