Gene detail information of Glyur001413s00028471 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G21790.1 | 8.00E-51 | tobamovirus multiplication 1 |
| NR | XP_010052828.1 | 7.57E-93 | PREDICTED: tobamovirus multiplication protein 1 [Eucalyptus grandis] |
| Swissprot | tr|Q402F4|TOM1_TOBAC | 2.00E-90 | Tobamovirus multiplication protein 1 |
| trEMBL | tr|A0A059CFM9|A0A059CFM9_EUCGR | 5.00E-92 | Uncharacterized protein {ECO:0000313|EMBL:KCW76946.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01413 | 42802 | 46517 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001413s00028471.1 | PF06454.6 | DUF1084 | 15 | 173 | 2.00E-71 |
| Glyur001413s00028471.2 | PF06454.6 | DUF1084 | 15 | 95 | 4.30E-35 |
| Glyur001413s00028471.2 | PF06454.6 | DUF1084 | 95 | 142 | 3.80E-12 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 4.820 |
| SRR1783600 | control | 4.863 |
| SRR1783602 | moderate drought stress | 5.670 |
| SRR1811619 | moderate drought stress | 5.640 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 6.764 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 6.804 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 2.801 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 2.604 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 4.957 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 4.843 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 4.578 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 4.504 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 9.451 |
| SRR2868004 | Drought Stress (root) | 13.748 |
| SRR2967015 | Control (root) | 10.513 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 6.855 |
| SRR9715740 | Leaf | 8.269 |
| SRR9715741 | Leaf | 6.779 |
| SRR9715739 | Root | 6.364 |
| SRR9715742 | Root | 5.614 |
| SRR9715743 | Root | 5.512 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 1.059 |
| SRR8749028 | MeJA induced 9h | 0.485 |
| SRR8749029 | MeJA induced 9h | 0.605 |
| SRR8749030 | Uninduced | 0.037 |
| SRR8749031 | Uninduced | 0.044 |
| SRR8749032 | Uninduced | 0.264 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 10.402 |
| SRR8400027 | Control - Root | 10.767 |