Gene detail information of Glyur001413s00028469 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G21890.1 | 7.00E-77 | |
| NR | KDO75477.1 | 0 | hypothetical protein CISIN_1g004229mg [Citrus sinensis] |
| COG | NP_967867.1 | 2.00E-08 | small heat shock protein [Bdellovibrio bacteriovorus HD100] |
| Swissprot | tr|O49710|HS154_ARATH | 8.00E-40 | 15.4 kDa class V heat shock protein |
| trEMBL | tr|A0A067GJ52|A0A067GJ52_CITSI | 0 | Uncharacterized protein {ECO:0000313|EMBL:KDO75477.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01413 | 33538 | 37402 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| -- |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001413s00028469.1 | PF01753.13 | zf-MYND | 290 | 331 | 1.30E-07 |
| Glyur001413s00028469.1 | PF00011.16 | HSP20 | 695 | 774 | 8.80E-15 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 13.790 |
| SRR1783600 | control | 13.472 |
| SRR1783602 | moderate drought stress | 12.021 |
| SRR1811619 | moderate drought stress | 11.517 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 11.977 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 11.797 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 3.419 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 3.391 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 7.539 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 7.428 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 3.801 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 3.539 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 24.982 |
| SRR2868004 | Drought Stress (root) | 20.301 |
| SRR2967015 | Control (root) | 23.915 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 6.052 |
| SRR9715740 | Leaf | 7.204 |
| SRR9715741 | Leaf | 7.818 |
| SRR9715739 | Root | 16.534 |
| SRR9715742 | Root | 11.776 |
| SRR9715743 | Root | 11.988 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 9.398 |
| SRR8749028 | MeJA induced 9h | 10.164 |
| SRR8749029 | MeJA induced 9h | 5.623 |
| SRR8749030 | Uninduced | 2.756 |
| SRR8749031 | Uninduced | 0.711 |
| SRR8749032 | Uninduced | 1.684 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 15.684 |
| SRR8400027 | Control - Root | 17.088 |