Gene detail information of Glyur001413s00028468


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT1G11650.22.00E-128RNA-binding (RRM/RBD/RNP motifs) family protein
NRXP_003546146.10PREDICTED: polyadenylate-binding protein RBP45-like [Glycine max]
COGYP_001514932.11.00E-10RNA-binding domain-containing protein [Acaryochloris marina MBIC11017]
Swissprottr|Q9SAB3|RB45B_ARATH2.00E-164Polyadenylate-binding protein RBP45B
trEMBLtr|I1MFG7|I1MFG7_SOYBN0Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA15G11380.1}

Sequence

Transcript Sequence
Protein Sequence


Location information (JBrowse)

ScaffoldStartEndStrand
Scaffold014132786732617-


Gene family

Gene familysubfamily
----


KEGG pathway

KOEnzymeEnzyme IDpathwaymapID
----------


Gene Ontology

molecular_function

GO:0000166  nucleotide binding

GO:0003676  nucleic acid binding



Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur001413s00028468.1PF00076.17RRM_1641292.60E-13
Glyur001413s00028468.1PF00076.17RRM_11572203.60E-13
Glyur001413s00028468.1PF00076.17RRM_12633278.10E-18


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control833.445
SRR1783600control831.913
SRR1783602moderate drought stress1464.648
SRR1811619moderate drought stress1448.543

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain961.680
DRR006520Root Summer glycyrrhizin high producing strain949.915
DRR006521Root Winter glycyrrhizin high producing strain794.230
DRR006522Root Winter glycyrrhizin high producing strain769.643
DRR006523Root Summer glycyrrhizin low producing strain1368.182
DRR006524Root Summer glycyrrhizin low producing strain1379.985
DRR006525Leaf Summer glycyrrhizin high producing strain106.608
DRR006526Leaf Summer glycyrrhizin high producing strain107.691

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress (root)561.743
SRR2868004Drought Stress (root)445.280
SRR2967015Control (root)566.913

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leaf129.467
SRR9715740Leaf130.237
SRR9715741Leaf145.459
SRR9715739Root1411.405
SRR9715742Root888.150
SRR9715743Root977.142

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h820.712
SRR8749028MeJA induced 9h477.109
SRR8749029MeJA induced 9h723.314
SRR8749030Uninduced684.268
SRR8749031Uninduced801.115
SRR8749032Uninduced997.618

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment - Root537.518
SRR8400027Control - Root465.206

© 2021 Resource Institute for Chinese & Ethnic Materia Medica, Guizhou University of Traditional Chinese Medicine
State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved