Gene detail

Gene detail information of Glyur001411s00038832

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G36930.2	2.00E-46	Disease resistance protein (TIR-NBS-LRR class) family
NR	KEH25122.1	8.94E-150	disease resistance protein (TIR-NBS-LRR class) [Medicago truncatula]
COG	YP_001914303.1	1.00E-09	leucin rich protein [Xanthomonas oryzae pv. oryzae PXO99A]
Swissprot	tr\|O23530\|SNC1_ARATH	3.00E-30	Protein SUPPRESSOR OF npr1-1, CONSTITUTIVE 1
trEMBL	tr\|A0A072U619\|A0A072U619_MEDTR	3.00E-150	Disease resistance protein (TIR-NBS-LRR class) {ECO:0000313\|EMBL:KEH25122.1}

Sequence

Transcript Sequence

>Glyur001411s00038832.1
ATGGAAATTCACAGGGCCATGGGTGCGGTGGTTGTGCCAGTATTCTATAAGGTAGATCCCTCAGAAGTTCGTAATCAGAAGGGCAAGAATGAAANTGAAGATATCAAGAACATTGTTAAACATGTTAATATTTTGCTGGGTGGGACAAAGTTATTTGTCACTAACCATCCCGTGGGAGTAGAATCTCGTGTTCAAGATGCAATCGATCAACTAAATATTCCACAATTAAAAAAAAACGTTTTACTTCTAGGGATATGGGGAATGGGAGGTACTGGTAAGACAACTATTGCCAAAGCCATTTACAATCAAATTGAGAACAAATTTGCAAGTAGGAGCTTCCTCCCAAATATTAGAGAAGTCTGGGAGCAACAGACTAACCAAGTTGCTCTACAACAACGACTTCTTGATGATATTTTTGAAACAATNACAATGAAGATACATAGCATTGAATCAGGGAAAAACATATTAAAAGAAAGACTTCCCCAAAAAAAGGNACTTGTTGTGCTTGATGACGGAACAAAAGCTGTGAAGGGACTGGCTTTGAAGTTGCCTGGCAAAGATACAATTCACCTGAAAACCAAAGCATTTAAGAAGATGAATAGACTCAGATTGCTTCAACTTTCCGGAGTGCGACTTGAAGGGGATTTTAAATATCTTACAAGGGATCTTAGATGGCTATGCTGGCATGGATTTCCCTCAACTCACGCACCTACNGAATTTCAGCAAGAAAGCTTAGTTGCCATTGACTTACAATATAGCAAGCTCAAACAAATCTGGAAGAATAGCCAGAAGTGCCTAGAGAATCTGAAAATTCTTAATCTTAGTCATTCCTGGGATTTGACTGAAACACCAGACTTTTCATACTTTCCTAATCTTGAAAAGTTAGTACTCAAAGACTGTCCAAGTTTGTATACGGTCTCTCATACCATTGGATATCTCCATAAACTTCTTCTGATAAATTTGGAAGACTGCACAGGTCTTCTTAGCCTTCCAAGGAGCATCTATAAATTAAAATCTCTGGAAACTTTGATTCTCTCAGGATGTTTACAGATTGACAAATTGGAGGAGGACTTGCAAATGGAATCATTGACAACCTTGATTGCCGCTAACACTGCTATAACAAAGGTGTCCTTTTCAATGATGCATCGCCTAGAGAAACTGAAAATTCTTAATCTTAGTCATTCCCATTATTTGACCGAAACCCCAGACTTCTCATCCTTGCCTAATCTTGAAGAGCTAGTACTTAAAAACTGTACAAGTTTGTCTGTGGTTTCCCAAACTATTGGATGTCTCCATAAACTTCTTCTGATAAATTTGGAAGATTGCACAGGTCTTATTGGCCTTCCTAGGAGCATCTATAAATTAAAATCTCTGGAAACTTTTATTCTCTCAAGATGTTTAATGATTGGAAAATTGGAGGAGGACTTGGAACAGATGGATTCATTGACATCCTTGATTGCTGATGCGACTGCTATAGTAACGGTGCCTTATTCAACAGTAAGATTAAAGAGCATTGAATATATTTCATTGTGTGGCTTTAAAGGGTTTTCACATGATGTGTTTCCTTCTCTCGTATGGTCTTGGATGTCACCAACAAATGATATGCTATACCTAGTGCCAATGTCACCTTCAATGGAGTTCCCAGACGATAGTTCCTGGAATCTGTTTTCTGCTGAGGACCTTTCAAAATTCAAGCTTCGCTATCTTCTTGTCAAGTTTGGCTCAGAACGACAACTAACTCAATTTGTAGCAGGAATTTTGATTGATTGTCGCAGTCAAGTTCACATACCAGGGTCAAAGAATTACTTGAATTCTGATCTGTTTATTCAAATGGGAACGAAATGCCAAGTCCCCAATATTGTTGATGACATCATTTTACAG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01411	799	11464	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0043531 ADP binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001411s00038832.1	PF00931.17	NB-ARC	61	171	1.90E-15

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	11.407
SRR1783600	control	11.266
SRR1783602	moderate drought stress	3.348
SRR1811619	moderate drought stress	3.491

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	6.888
DRR006520	Root Summer glycyrrhizin high producing strain	6.516
DRR006521	Root Winter glycyrrhizin high producing strain	2.738
DRR006522	Root Winter glycyrrhizin high producing strain	2.850
DRR006523	Root Summer glycyrrhizin low producing strain	3.844
DRR006524	Root Summer glycyrrhizin low producing strain	4.427
DRR006525	Leaf Summer glycyrrhizin high producing strain	1.962
DRR006526	Leaf Summer glycyrrhizin high producing strain	1.990

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	16.782
SRR2868004	Drought Stress (root)	24.966
SRR2967015	Control (root)	21.566

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	4.106
SRR9715740	Leaf	5.696
SRR9715741	Leaf	14.989
SRR9715739	Root	2.016
SRR9715742	Root	16.664
SRR9715743	Root	15.830

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	13.465
SRR8749028	MeJA induced 9h	11.482
SRR8749029	MeJA induced 9h	7.692
SRR8749030	Uninduced	8.660
SRR8749031	Uninduced	8.669
SRR8749032	Uninduced	8.167

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	7.583
SRR8400027	Control - Root	14.139