Gene detail

Gene detail information of Glyur001410s00029907

Functional Annotation

Database	Orthologs	Annotation
TAIR	AT5G16180.1	ortholog of maize chloroplast splicing factor CRS1
NR	XP_004507538.1	PREDICTED: chloroplastic group IIA intron splicing facilitator CRS1, chloroplastic-like [Cicer arietinum]
Swissprot	tr\|Q9LF10\|CRS1_ARATH	Chloroplastic group IIA intron splicing facilitator CRS1, chloroplastic (Precursor)
trEMBL	tr\|K7MVH3\|K7MVH3_SOYBN	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA18G53241.1}

Sequence

Transcript Sequence

>Glyur001410s00029907.1
CAGNGCAGTTGCGTTTGAGGATCAAACATTGAATTTTTGAAGATCTCGTATAGCATCAGAGCAGGCATCGTCAATCATGCTCTTCCTCCTCAACTCTTCCGCATCTTCATATTGTGCCATCCACATTTCCTCTTCATTGCCCCCAAACCCCAACAACAACAACAGCAACAGCCACCTTAATCACCGACCCACTTCCCTTCCAATTCCCAACGAGTCCCATTCCGATGTTTCCATCAAAGCCCCCACACCTCCATGGATGAAGGGTCCTCTCCTTCTCCAACCCCACGACCTTGCCAACACGTGCCACGTGGCAAAACACGAGCCTTCCGATAAATCCCTGACCGGTAAAGAGGTAAGAGGGAAGAAGGCCATGAAGAAAATCGCCCAGAGAATTCAGAGGCTCAAAGGGACTCGTGATTTGGATGAGACTCAAATGGGTTCTGAAAAAGTTGAAAACTTTGGGGCGTGTTTGGAGGGTTTGAAGGGAGAGAATGAGGAAGTTGGGAGGAGGAGTAGTAGTAGAGAGAGAATGCCGTGGGAGAACGATGAGAAGGTTGTTTTTCTGAGGGTGAAAAGGGAAAAGCATGTAACTGTTGCGGATTTGACACTTGATAAGGTGCTGNTTCAGAGGTTGAGGGGTGAGGCTGCAAGGATGAGAAAGTGGGTGAAGGTTAAGAAAGCTGGTGTTACACAAGCTGTTGTGGATGAAATTAAAAGGACTTGGAGGAATAATGAACTTGCCATGGTTAAATTTGATATCCCTTTATGTAGGAATATGGATAGAGCAAGGGAAATTGNTGAGACAAAGACTGGAGGCTTGGTTGTCTGGAGTAAGAAGGACGCTCTTGTGGTTTACAGGGGATGCAACCATCAGTTGACCTCTAAAGGTTCTCCAAAGACTTATACCAGCTTAGTTCATAGTGAAANAACAAATCTTTATGAAACAAATGGGGTGAATTCAGCTGACAAAGATGATCTTTACTGGGTTAGATCCAACCGTAGTACAAGTGAGATACCGAGCTGGAATGCTGATAGATCATTGTATGAGAGGGAGTGTGATAGACTATTGGATGGCTTAGGATCTCGCTTCATTGATTGGTGGATGCACAAGCCACTTCCGGTGGATGCTGACTTACTTCCNGAAGTGGTTCCTGGATTTGAGCCTCCNTTTAGGCTNTGTCCACCTCATGCTAGNNTAAAACTAACTGATGATGAACTGACATACTTGAGGAAGATTTCTCACCCTTTACCAACTCATTTTGTCCTTGGTACCTTCCTGCTTGATGTAATCCTTCAATTTCTTTTTCAGGCTGAGAATACATATTTATTTTCTTCTTTTTCGCTTGATGCTGATGAATTGGTGCAATTTTTACAAATATTTACCATGAATATAAGCCTATCCATACCTGGTCTACTTCTTGTACGTGGTCTAGCATTATCTGTGTCAAGAAGAAGGAACAAAAGACTTCAGGGCTTAGCTGCTGCTATCTTAAAGTTGTGGCAGAAGAGTCTTATAGCAAAAATTGCTATCAAGTATGGAGTTCCAAATACTGACAATGAAATGATGGCCAATGAACTGAAGGCAAGTTTCATAGAAAGTTACTGTTCTATGTGTCATCTCACTGGAGGAGTTCTATTGTTGCGCAACAAGTTTTACATAATACTCTATAGGGGAAAAGATTTCCTTCCTAGAAGAGTTGCAGATTTGGTAGAAAAGAGAGAATTGGAGCTTACAAGTTGTCAACTTCAAGAAGAAGTTGCACGGATGAAAGCAATTCAAGCCTTTTCTTCTATTGATGAACTGCCGCGAGACACTAGTACAAGTGGAACTTTAACAGAATTTAGGAAAATCCAAACAAAGCTTGAGGATATAAAAGAAGTCAATGTAGATTTAAACATTTCACTGGAAGCAGAAATATATAGACTGGAGAGGGCATTGAGAGCGGAACAACATAAAGCTTTCATTCTTAACAAGAAAATAGAGAGATCAACAAGGGAATTATCAAAGTTAAATGCTACATGGACACCAGCTGAGAAGGATATAGACTTGGAAATAATGACAGATGAGGAGAGAGAATGTTTCCGAAAGATAGGACTGAAGATGAGAAGTTGCTTAGTGCTTGGTAGGCGCGGAGTCTTTGATGGTGTATTGGAAGGTCTACATCAGCACTGGAAACACAGAGAAGTAGTGAAAGTCATTACAATGCAGAGACTATTCAGTCAGGTCATCTACACTGCCACATTTCTGGAGAGAGAGAGTGGTGGAATTTTAGTTTCAGTTGATAAACTAAAAGAGGGCCATGCTATTATTATNTATCGTGGAAAAAACTATAGACGGCCTTCAGAAAAGATAGCNGAAAATCTTCTAACCAAAAGAAAAGCATTGNGTAGGTCTCTTGAAATGCAGAGAATTGGATCACTGAAGTTTTTTGCTCATCAAAGACGGCAGGCAATCTCTGATTTGAAGCTGAAACTGGCAGAACTGCAGCAAAGAAAGGAAGTTGAGCTGAGAGAATTTGAAAATTAATGCATGCATATCTAAGACATGTTTGAAGCTGTAACTGCTCTTAAATTGTCAGCTCATTGACNGTTGATGGGATAAGACACCGGAAAAATTCAACAAGCAAAGCATCAACGAGCAGCATNCTTTACAAAGAAACCAAGTTGCATTTTTGCTACCATCTGGAAAACTTGAAATAGCAGTTCTGCATGGAGTAAATGAAGCACAAGCAAATGTACATCCTGTAAGTTGGAGAAAGGTAGACTGTGGAATTCGTTTTCTTCTTTTTGTAAAGAAACAAATGTTTACTTTATGAGAGTGAAACCACGGCAATGATAGTAAAATTTTGAAATTGCTGGACGAGAGAAAAGTAAAATCTCCAAAGGTATTTAGTAGCCAGCAAATTTCCCACTACAAACATGTTATGGGTTTTGAAGTTCAACAAAGGCATGCAAAGTTCTATCCAAGTACCAACTATAATATACGAGTTACATTACAATCACAATTTCATTTTTTGTTTGCTGAACTAATTTGATTTTATGGAAC

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01410	56325	62768	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0003723 RNA binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001410s00029907.1	PF01985.16	CRS1_YhbY	183	261	1.90E-14
Glyur001410s00029907.1	PF01985.16	CRS1_YhbY	461	532	1.20E-05
Glyur001410s00029907.1	PF01985.16	CRS1_YhbY	661	748	1.70E-15
Glyur001410s00029907.2	PF01985.16	CRS1_YhbY	183	261	1.80E-14
Glyur001410s00029907.2	PF01985.16	CRS1_YhbY	422	493	1.10E-05
Glyur001410s00029907.2	PF01985.16	CRS1_YhbY	622	709	1.50E-15

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	2.217
SRR1783600	control	2.244
SRR1783602	moderate drought stress	2.394
SRR1811619	moderate drought stress	2.357

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	2.432
DRR006520	Root Summer glycyrrhizin high producing strain	1.947
DRR006521	Root Winter glycyrrhizin high producing strain	6.146
DRR006522	Root Winter glycyrrhizin high producing strain	6.332
DRR006523	Root Summer glycyrrhizin low producing strain	2.867
DRR006524	Root Summer glycyrrhizin low producing strain	3.107
DRR006525	Leaf Summer glycyrrhizin high producing strain	5.814
DRR006526	Leaf Summer glycyrrhizin high producing strain	5.609

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	4.613
SRR2868004	Drought Stress (root)	4.952
SRR2967015	Control (root)	4.169

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	8.550
SRR9715740	Leaf	13.224
SRR9715741	Leaf	10.480
SRR9715739	Root	0.458
SRR9715742	Root	1.812
SRR9715743	Root	1.158

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	6.792
SRR8749028	MeJA induced 9h	13.049
SRR8749029	MeJA induced 9h	5.736
SRR8749030	Uninduced	9.576
SRR8749031	Uninduced	7.993
SRR8749032	Uninduced	4.648

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	7.383
SRR8400027	Control - Root	7.306