Gene detail

Gene detail information of Glyur001410s00029901.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G16170.1	7.00E-83	Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein
NR	XP_003530921.1	9.73E-155	PREDICTED: uncharacterized protein LOC100810653 [Glycine max]
trEMBL	tr\|K7MVI2\|K7MVI2_SOYBN	1.00E-146	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA18G53260.2}

Sequence

Transcript Sequence

>Glyur001410s00029901.1
ATGGAGCACAAACCATCTCACCTAGTATCTATGCCATTCATTAGTCGCTTTAATGTCTATCACTTGGTATTCTTTGTAATTGGTATATCTCTAGGAGTAGTTGCAACTTTATGCTTCAATAGCCTATCTTTCAGTTTACAATCCTTTCTGTATCCAATGAAGACACCAATCACAACNTTGCTTCCACCATCATCACCATTGAAAGTACTTTCAAACACAAACTCCAACTCAACTAGTACTACTACTCATGCATTGAAGANAACTCTCATACATAACATGACCGACCAAGAATTGTTCCTCAAAGCATCTGAGGTGGTCTCAGGAATAATTGATCAAGATGTTCCAAACAAGGCTATTCCAAAAGTGGCTTTCATGTTCTTGGCAAAAGGTGCACTTCCCCTGGCACCCTTATGGGAGAACTTCTTCAAAGGCCATGCTGTGAAGTGGGGTAGACTATCAATGACAGATGCTGAGAAACGTCTTCTGGCAAATGCACTCTTGGACAAATCCAACCAACGTTTTGTGTTGCTCTCAGAATCCTGCATCCCTTTGTTTGGCTTCAGAACCATATATGACTACCTCNTGAACTCAAGCCTTAGCTTTTTAGGCTCATTTGATGACCCAGGAAAAGCTGGGAGGAGAAGATACAACCCAAAAATGTGGCCTATAATTAACATAACAGATTGGAGAAAAGGGTCTCAATGGTTTGAACTGCATCGTGATCTTGCCATTCACATTGTATTTGACACCAAATACTACCCTATGTTTCAGCACTACTGTAATTTTCCAACATGCTTTGCGGATGAGCATTATATCCCAACTTTTGTGCACATGATGCACCCTGAATTGAACTCCAATCGTAGCATAACTTGGGTGGATTGGTCAAAAGGTGGACCTCATCCTAGAAAATTTGGAAGGAGTGATATTACACACGAGTTTATGAACCGAATTCGCTTTGGATCAACATGTGTCTATAATGGGAAGACCACCAAAATGTGTTTTCTTTTTGCAAGAAAGTTTCATCCAAGTGCATTAGACCCTTTATTGCAATTGTCTCCCTTAGTTGTTCACTGTGCCCTCCCATTCTTGCTTCGGATCAGCGCAATTGGCTTCTACTTTGTTCTTAGCATTCTTGTATATGAG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01410	35996	39141	+

Gene family

Gene family	subfamily
Carbohydrate-Active enzymes Family	GTnc

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

cellular_component
GO:0016020 membrane

molecular_function
GO:0008375 acetylglucosaminyltransferase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001410s00029901.1	PF02485.16	Branch	146	318	4.70E-61

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.000
SRR1783600	control	0.000
SRR1783602	moderate drought stress	0.000
SRR1811619	moderate drought stress	0.000

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.000
DRR006520	Root Summer glycyrrhizin high producing strain	0.000
DRR006521	Root Winter glycyrrhizin high producing strain	0.000
DRR006522	Root Winter glycyrrhizin high producing strain	0.000
DRR006523	Root Summer glycyrrhizin low producing strain	0.000
DRR006524	Root Summer glycyrrhizin low producing strain	0.000
DRR006525	Leaf Summer glycyrrhizin high producing strain	1.061
DRR006526	Leaf Summer glycyrrhizin high producing strain	1.166

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	0.000
SRR2868004	Drought Stress (root)	0.000
SRR2967015	Control (root)	0.022

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.335
SRR9715740	Leaf	0.739
SRR9715741	Leaf	0.521
SRR9715739	Root	0.000
SRR9715742	Root	0.108
SRR9715743	Root	0.041

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.230
SRR8749028	MeJA induced 9h	0.000
SRR8749029	MeJA induced 9h	0.307
SRR8749030	Uninduced	0.670
SRR8749031	Uninduced	0.791
SRR8749032	Uninduced	0.477

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	0.010
SRR8400027	Control - Root	0.015