Gene detail

Gene detail information of Glyur001410s00029897

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G16150.3	0	plastidic GLC translocator
NR	XP_003624350.1	0	Hexose transporter [Medicago truncatula]
COG	YP_004290515.1	3.00E-79	sugar transporter [Methanobacterium sp. AL-21]
Swissprot	tr\|Q56ZZ7\|PLST4_ARATH	0	Plastidic glucose transporter 4
trEMBL	tr\|G7KUB8\|G7KUB8_MEDTR	0	Sugar porter (SP) family MFS transporter {ECO:0000313\|EMBL:AES80568.1}

Sequence

Transcript Sequence

>Glyur001410s00029897.1
CGTTTTCAATTTTATCGGATTTCTCGAAATTTTAGCAGTGTCCTAGATTCACTTCCCNGTTTGGTCGGTTACTGCATTTTTCGTGTCAATATCAAATTCTGGTTTTGCTCATTGGTTTTTTTTTTCCTCTTTTTTTTTTTAACAAAAGGAAAAAAGAAAATTCTCCCAACATTTGATGTGTTTTGACTTTCTGGGTATTGAAGTTTCAACTTTTGGCGTTGAAGTGGGTTGAGAAGCAAAGGGTGTTGGCGGGTATTGGTGAATTCATAACTGAGAGTGTTGAGACNAAGGATCAGAAGAGACTCCATGACTGGTGGAACCAGCTGCTGCGGTTTGAGGCCTGGTTCGGTCATCATGGAAACCGAGTTGACTAGTAGAGGAAGGGGTTTTGGATTTGGTGGCATGTTTGGTTACCCGGCTAAGCTTAGACCAGCCAGGGTTCAAGCTTCTGATGAAGATATTGAGGATCTTGTCCCCAATAATGCGCCAGGCAGACCTTCTGGAACCGTTCTGCCCTATGTTGGTGTTGCTTGCCTCGGAGCCATTTTATTTGGCTATCATCTCGGGGTGGTAAATGGTACTCTTGAGTACCTTGCCAAGGATCTTGGAATTGCTCAAAACACTGTGCTACAAGGATGGATTGTCAGCACACTACTTGCTGGTGCTTTTGTTGGTTCATTTACTGGTGGAGCATTGGCCGACAAATTTGGTCGAACTAGGACTTTTCAGTTGGATGCAATCCCTCTAGCAATTGGAGGATTTCTTTGTGCTACNGCCCAGAGTGTTCAAACAATGATCATTGGTCGCTTGCTAGCTGGGATAGGAATTGGCGTTACGTCTGCAATTGTACCACTATACATATCTGAGATTTCTCCAACCGAAATTCGAGGTGCACTTGGATCTGTCAATCAACTTTTTATATGTATCGGGATTCTTGCAGCACTAGTGGCTGGTTTGCCTNTGGCGGGAAATCCTATATGGTGGCGAACAATGTTTGGAATTGCAGTAGTGCCATCAATTCTATTAGCACTTGGAATGGCGATATCTCCAGAGAGTCCTCGGTGGCTTTATCAGCAAGGGAAAATCTCTGAAGCCGAAAAGGCTATTAAAACACTATATGGAAAAGAAATGGTTGCTTTNGTTATGCAGGACTTGACAGCAACAAGTCAAGGTTCTTCTGAACCTGACGCAGGATGGTTTGATCTGTTCAGTAGACGATATTGGAAAGTTGTCAGTGTTGGGGCAGCACTTTTCTTGTTCCAGCAGTTGGCTGGAATAAATGCTGTGGTATATTATTCAACTTCTGTTTTCTGCAGTGCTGGAATTGCTTCTGACGTTGCAGCAAGCACTGTTGTTGCTTCCTACTTGATGGACAAAAAAGGAAGGAAAAGTCTCCTTATCACAAGCTTTAGTGGGATGGCTGCTTCTATGTTGCTTCTTTCTCTGTCTTTTACTTGGAAGGTCCTTGCACCATACTCTGGCACCCTTGCAGTCCTTGGGACAGTCCTCTATGTTTTATCCTTCTCTCTTGGTGCTGGTCCAGTGCCTGCCCTTCTTCTACCAGAGATATTTGCATCTAGAATCAGAGCAAAAGCAATTTCTTTGTCATTAGGCATGCATTGGATTTGTAACTTTGTNATCGGACTCTATTTCTTGAGTGTTGTAAACAAGTTTGGGATCAGTACGGTATACTTGGGGTTCTCAACTGTGTGTCTTCTTGCTGTCTTGTACATAGCTGGCAATGTTGTGGAAACAAAGGGTCGATCATTGGAAGAAATTGAACGGGCTCTTAGCTTTGCATCTTGAAATCCTTCATAAATGCATGTGGTCACGATTCTAATGCCACCCTTGGAATTTGTGTACCATAGGACTCTTGTTACTAATTTTACCCTTGATGTGGTCATTATTTTTATCTTATGTA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01410	19024	27066	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0055085 transmembrane transport

cellular_component

GO:0016020 membrane

GO:0016021 integral component of membrane

molecular_function

GO:0005215 transporter activity

GO:0022857 transmembrane transporter activity

GO:0022891 substrate-specific transmembrane transporter activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001410s00029897.1	PF00083.19	Sugar_tr	74	494	3.10E-93

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	2.809
SRR1783600	control	2.826
SRR1783602	moderate drought stress	2.770
SRR1811619	moderate drought stress	2.660

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	7.598
DRR006520	Root Summer glycyrrhizin high producing strain	7.571
DRR006521	Root Winter glycyrrhizin high producing strain	10.063
DRR006522	Root Winter glycyrrhizin high producing strain	9.636
DRR006523	Root Summer glycyrrhizin low producing strain	6.684
DRR006524	Root Summer glycyrrhizin low producing strain	7.679
DRR006525	Leaf Summer glycyrrhizin high producing strain	3.934
DRR006526	Leaf Summer glycyrrhizin high producing strain	3.801

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	26.877
SRR2868004	Drought Stress (root)	31.156
SRR2967015	Control (root)	27.201

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	5.580
SRR9715740	Leaf	5.605
SRR9715741	Leaf	6.222
SRR9715739	Root	3.999
SRR9715742	Root	3.918
SRR9715743	Root	4.625

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	7.006
SRR8749028	MeJA induced 9h	6.725
SRR8749029	MeJA induced 9h	6.801
SRR8749030	Uninduced	5.767
SRR8749031	Uninduced	4.025
SRR8749032	Uninduced	3.409

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	17.197
SRR8400027	Control - Root	17.168