Gene detail information of Glyur001408s00036391 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G14660.2 | 1.00E-70 | peptide deformylase 1B |
| NR | XP_004491728.1 | 2.71E-120 | PREDICTED: peptide deformylase 1B, chloroplastic-like [Cicer arietinum] |
| COG | YP_006443750.1 | 8.00E-42 | peptide deformylase [Anaerobaculum mobile DSM 13181] |
| Swissprot | tr|Q9FV54|DEF1B_SOLLC | 3.00E-90 | Peptide deformylase 1B, chloroplastic (Precursor) |
| trEMBL | tr|K7MXW7|K7MXW7_SOYBN | 6.00E-119 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA19G29316.2} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01408 | 57431 | 68779 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001408s00036391.1 | PF01327.16 | Pep_deformylase | 69 | 217 | 1.20E-48 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 11.733 |
| SRR1783600 | control | 11.339 |
| SRR1783602 | moderate drought stress | 8.364 |
| SRR1811619 | moderate drought stress | 8.590 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 9.737 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 9.164 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 19.206 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 17.772 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 5.702 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 6.624 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 39.435 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 39.397 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 9.383 |
| SRR2868004 | Drought Stress (root) | 7.697 |
| SRR2967015 | Control (root) | 7.650 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 23.277 |
| SRR9715740 | Leaf | 29.485 |
| SRR9715741 | Leaf | 27.420 |
| SRR9715739 | Root | 3.763 |
| SRR9715742 | Root | 6.821 |
| SRR9715743 | Root | 6.330 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 10.867 |
| SRR8749028 | MeJA induced 9h | 9.002 |
| SRR8749029 | MeJA induced 9h | 7.606 |
| SRR8749030 | Uninduced | 6.056 |
| SRR8749031 | Uninduced | 6.319 |
| SRR8749032 | Uninduced | 4.569 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 13.000 |
| SRR8400027 | Control - Root | 10.961 |