Gene detail

Gene detail information of Glyur001407s00036530

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G15910.1	2.00E-48	XH/XS domain-containing protein
NR	XP_006602003.1	0	PREDICTED: microtubule-associated tumor suppressor 1 homolog [Glycine max]
Swissprot	tr\|Q9S9P3\|FDM1_ARATH	5.00E-54	Factor of DNA methylation 1 {ECO:0000303\|PubMed:22302148}
trEMBL	tr\|K7MPS1\|K7MPS1_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA18G04295.2}

Sequence

Transcript Sequence

>Glyur001407s00036530.1
ATGTTGAATANTAGTTATGAGGAGACTCTGAGCAAGCAGAGAAGGATTATTGTTAGCCTTCAGAATGAAATTAACTTCAAGGATCACAAGTTAGTGGAGATGGAGCATAAACATAATGAGACACTTGCTTTTGTGCGCAGACTCATTATAGGGCTTGTAGAGAAAATTGGTTCCAAAGATAGAAGTCTGCTTGAAATGGAATGCAAGTACAATGAATCTTTGAANATGGCTCAGAAGTTGATGAATGAGAAAGATGAGTTGTGTGAAGGATATCACAAAGAATTACAAGTGATGAAGGTCATGGACCTCGGTAAGAATCATGACATGGAACGTTTAAAGAAAGAGAATGAGCAGCTTGCCAAGCAATTGGAGGAGAGCAAAGCCCTAAATGATCAGCAGCAGAAGAACTTCANTGNGGAGATTCAAAAGTTGCAAACAGAGTTACAAGATCAGAGTCATGTTGAAAGTGGTTGCAATTTGAACACTCAAATTACCAATTTTAGAAATCAATTAAAGGACAAAATGGAATACTTGGAGCTTGTGGAAAACCTTTATAGTTCCCTGGTAGTTAAAGAGCATCAGTATAAACAAGAACTACTTGATGCTCGTAAAGAATCTATAAATAGTTTACAAGATATGTTCAGTCTCAGAGGTCGATCTCAGCTTGGAATTAAAAGAATGGGAGAATTAGATCCAAAACCATTTCAAGATTTGTGCTTGCAAAAGTACTCATGTGAACAGTGGCAGGAGATATCTGCCAAGTTATGTTCATCATGGGAAGAGAATCTGAAGAATCCAGCTTGGCATCCTTTCAAAACAATTAAGGTCAATGGCATTTTACAGGAAATACTAGATGAAAATGATGAAAAATTGAAAGGATTGAGGAATGAGTGTGGTGAAGAGGTATACAAGGCTATAGCAAATGCATTGTTGGAAATAGAAGAATACAATTCAAGTGGAAGATATGCAATCCCTGAAATTTGGAACTGGAAGGAGGGAAGGAAAGCCACTTTGAAAGAAGTTATCCAATATATCATCAGGCAATTGAAGACTCACAAGCGCAAAAGAAAGTAG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01407	28146	31542	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

Not hits found.

Not hits found.

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001407s00036530.1	PF03469.9	XH	225	356	4.40E-49

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.000
SRR1783600	control	0.007
SRR1783602	moderate drought stress	0.033
SRR1811619	moderate drought stress	0.035

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.413
DRR006520	Root Summer glycyrrhizin high producing strain	0.240
DRR006521	Root Winter glycyrrhizin high producing strain	0.317
DRR006522	Root Winter glycyrrhizin high producing strain	0.202
DRR006523	Root Summer glycyrrhizin low producing strain	0.539
DRR006524	Root Summer glycyrrhizin low producing strain	0.566
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.554
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.408

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	0.989
SRR2868004	Drought Stress (root)	0.770
SRR2967015	Control (root)	1.312

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.247
SRR9715740	Leaf	0.055
SRR9715741	Leaf	0.060
SRR9715739	Root	0.000
SRR9715742	Root	0.000
SRR9715743	Root	0.000

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	6.658
SRR8749028	MeJA induced 9h	11.572
SRR8749029	MeJA induced 9h	7.514
SRR8749030	Uninduced	6.109
SRR8749031	Uninduced	2.624
SRR8749032	Uninduced	2.651

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	0.370
SRR8400027	Control - Root	0.405