Gene detail information of Glyur001407s00036529 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G01780.1 | 2.00E-14 | XH/XS domain-containing protein |
| NR | XP_006602003.1 | 6.40E-19 | PREDICTED: microtubule-associated tumor suppressor 1 homolog [Glycine max] |
| Swissprot | tr|Q8VZ79|IDN2_ARATH | 6.00E-15 | Protein INVOLVED IN DE NOVO 2 {ECO:0000303|PubMed:19915591} |
| trEMBL | tr|K7MPS1|K7MPS1_SOYBN | 2.00E-19 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA18G04295.2} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01407 | 16213 | 20706 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001407s00036529.1 | PF03469.9 | XH | 138 | 189 | 2.30E-17 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 2.544 |
| SRR1783600 | control | 2.416 |
| SRR1783602 | moderate drought stress | 1.950 |
| SRR1811619 | moderate drought stress | 2.147 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 1.506 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 1.445 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 3.147 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 4.175 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.901 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.568 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.241 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.181 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 0.826 |
| SRR2868004 | Drought Stress (root) | 0.885 |
| SRR2967015 | Control (root) | 1.020 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 0.376 |
| SRR9715740 | Leaf | 0.075 |
| SRR9715741 | Leaf | 0.764 |
| SRR9715739 | Root | 0.000 |
| SRR9715742 | Root | 0.035 |
| SRR9715743 | Root | 0.456 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.543 |
| SRR8749028 | MeJA induced 9h | 0.377 |
| SRR8749029 | MeJA induced 9h | 0.030 |
| SRR8749030 | Uninduced | 0.032 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 2.059 |
| SRR8400027 | Control - Root | 1.726 |