Gene detail information of Glyur001406s00030099 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G01660.1 | 1.00E-64 | plasmodesmata-located protein 6 |
| NR | XP_004503365.1 | 2.30E-147 | PREDICTED: cysteine-rich repeat secretory protein 12-like [Cicer arietinum] |
| Swissprot | tr|Q9ZU94|CRR12_ARATH | 4.00E-108 | Cysteine-rich repeat secretory protein 12 (Precursor) |
| trEMBL | tr|I1K5Q6|I1K5Q6_SOYBN | 3.00E-143 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA05G34990.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01406 | 68479 | 72058 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001406s00030099.1 | PF01657.12 | Stress-antifung | 35 | 132 | 4.20E-21 |
| Glyur001406s00030099.1 | PF01657.12 | Stress-antifung | 168 | 236 | 5.40E-16 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 10.105 |
| SRR1783600 | control | 9.671 |
| SRR1783602 | moderate drought stress | 14.255 |
| SRR1811619 | moderate drought stress | 14.096 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 15.737 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 15.348 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.196 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.127 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 9.872 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 9.788 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 33.998 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 34.379 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 30.761 |
| SRR2868004 | Drought Stress (root) | 23.612 |
| SRR2967015 | Control (root) | 25.436 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 108.101 |
| SRR9715740 | Leaf | 55.698 |
| SRR9715741 | Leaf | 67.875 |
| SRR9715739 | Root | 8.169 |
| SRR9715742 | Root | 15.760 |
| SRR9715743 | Root | 13.752 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 91.865 |
| SRR8749028 | MeJA induced 9h | 79.940 |
| SRR8749029 | MeJA induced 9h | 104.455 |
| SRR8749030 | Uninduced | 19.255 |
| SRR8749031 | Uninduced | 8.875 |
| SRR8749032 | Uninduced | 13.422 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 18.414 |
| SRR8400027 | Control - Root | 29.328 |