Gene detail

Gene detail information of Glyur001406s00030095.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G02760.1	5.00E-84	Class II aaRS and biotin synthetases superfamily protein
NR	XP_007160418.1	0	hypothetical protein PHAVU_002G320100g [Phaseolus vulgaris]
COG	YP_003318736.1	8.00E-26	histidyl-tRNA synthetase [Sphaerobacter thermophilus DSM 20745]
Swissprot	tr\|P93422\|SYH_ORYSJ	2.00E-90	Histidine--tRNA ligase
trEMBL	tr\|V7CQD4\|V7CQD4_PHAVU	0	Uncharacterized protein {ECO:0000313\|EMBL:ESW32412.1}

Sequence

Transcript Sequence

>Glyur001406s00030095.1
CTAGTTATTATTCATTTTTTATTTATGAATATTAATGGTAGAGAAGCACGTAGCGGNGGCACAGAGAAGAACCCTGAGCTCTGAAACTGAAGTTAAACCCTCGCTCGTGTGGCACATAGCTTGAGGTTGGAGCCAAAATGGGTGACGGTGGCGTCGTAACCCTCGGTGGCAAGGGCTCATCACTCTCTTCCTCCTCCCTCTACGCCGTAGCCACTGGTCGCGCTCACGTGCGGATCGATTCCTCCGCACTCGACAGGCTCTCCTCAACAACAACAACGTCGTCGTCATCGAACATCACCATNCCCATCCCAGAGTTCCTAACCCCACAACAAACACGTGCCTTCCTCCTCGACCTCCTCAACAAGCTCCTCCACTGCAACTCCCCCTCACGCATTCCCCAATGCATCTCCGAAGCCCTAAACTCCAACACTTTCCGATTCGAAAACCTCGATGCCACCGAGGACGAGCAATTCGTGCTCAACAACTCGCGTTCCGCATTTATCGGACCTTCTGCAATTCTCGATCACCAATCCGCCGCGCTCTCCGCGCTCGCCGACGTGGCGGCCGCGCTTTCGTGCGAGGCATTGAAGGCCGACGTATCGGCCTTCAATTTGATTGATTCCGGCGACGGACACACCTCTAAGGACGAGGTCGGTGTCGCCGCCGACATGAGGGTTCTGCTTAACGGCTCCAAGTTGGTCGGGAAGGATAATAAGATCCCTTCGGTTTNGAGAATCCCCGAAGTTCATGGGATNATGAGGAAGATGGTGAAATTGGTGCATTCCGAGATGCGGGTTCAGTTGAATTCGGGTCATGGGAGTGAGCTTGCCTTGTGCACGGTGCTGTCGCCTTTGGCGCAAGCACTGCGGGAGCTTGGTGAGTGTAGTTTTGCTCGTGCACAGAGTAATTTAGCATCCATAGGTAGCAGTGCTCTGAGATCTAGTCTTGTGGAGATCTTTGGGAAGGAATGCCCAACTGATGCCAGTTTGAGTAGCCATTGTGTAGCGGCTTTGAATTTGGTTCTTGGAAAGGATTATGATAAGTTTGCACATGAAATCAGTGTGCTGTTGGGGCTNGTGTGGAAAATTGTGGCTTGGGAAGTCGTGACTGCGTTTGCGGTACTCGAGGCTGCTGAGCTGAGTGAAAAGATCCAAGATGTTCGGGAAAATGGAGAGGGTTCCAAAGCGGAAAAGAAGAAGAAGAAGGTTGTCTTGGGGAAAGGTACTAGTTCGATTTTGCCATTGATCAAGGACAGGTTGCAGAGGGGAAGACAGGGCGNCGATGTAGAGAATTCGTGGCTACTGGAGACATTGGTGGCGGATTTTTCGTCGTTTTTGGATTTGGCTGATCCCGAGTTCAATGAGTTTTTATTGAAAGTAAAGGATATTGTTGAGAGCAATGAGAGCAGAAGGTTGCCCAAGATTCCCAAGGGGACTCGTGATTTTGCTAAAGAACAAATGACTATTAGAAAGAAAGCGTTTTCAATAATAGAAAAAGTTTTTGAGAGGCATGGTGCCACAGCCTTGGATACCCCTGTCTTTGAATTGCGGGAAACACTCATGGGAAAATATGGAGAAGACTCAAAGTTGATTTATGATCTTGCTGACCAGATAAAGTTGAATCATAGAAAGTTACTGGATGGCATGATGCAAATATGTGGAGTACCTCCTGAAAAGTTTAGGACTATATGTTCAAGTATTGACAAGTTGGACAAACAATCCTTTCAACAGATAAGAAAAGAAATGGTGGAAGAGAAAGGATTAACGGCTGAGACAGCAGACAGAATTGAAACTTTTGTTAAAGAAAAAGGACCTCCTTTAGCATTGTTATCTAAATTTAAACAAGAAGGCAGTGCTTTCTTAGAAAATGCTGGATCTGTTGATGCATTAAATGACCTGGAAATTTTATTTAAAGCTCTTGATAAATCAAAACGCATTGATAAAGTGGTTTTTGACTTGAGTCTTGCCAGAGGTCTTGATTATTATACTGGAGTCATATTTGAAGCTGTTTTCAAAGGGGGTGCTCAGATGGCTCGACCAACCAAGACAGAGGTGCTAGTGAGCATATTAGGGAATGACATAACACTCGGGGCAGAGCTGGCAGGTGAACTGTGGGATGTTGGGGTGAATGCAGAATTCTTGGTCAATAAAAGAAGACAGAAGCACTTTGACTATGCAAAAGAATCAAGGATCCCTTGGATGNTACTCGTTGGTGAGCAGGAAATAAAAGAAGGCATGGTACAATTGAAGAACCTCGAGGCCAGCAATGATGTGAACATTCCTAGAGGAAATTTTGTGGAGGAACTACGGAGACGGTTGTACCCATAAGGCCCAGTTAGCATTTGCTGCATCCAACCTCGTGTTTCAGCGTTCATTTTATTGACCAAAAAAAAAAAAGCGTTCATTTTTACATCAGAATTGAATTGAAGGAGATATAGGTTTTACTGATATTCATTTACCAAATTTAGTTGAGGAAAATGGCAGAGTTTATCAAGATATTGAGTTTGTTATGCAATAGATTAAC

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01406	43986	49365	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K01892	HARS, hisS	EC:6.1.1.21	Aminoacyl-tRNA biosynthesis	map00970

Gene Ontology

biological_process
GO:0009058 biosynthetic process

cellular_component
GO:0005737 cytoplasm

molecular_function

GO:0003824 catalytic activity

GO:0016841 ammonia-lyase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001406s00030095.1	PF00221.14	Lyase_aromatic	102	224	2.80E-07
Glyur001406s00030095.1	PF13393.1	tRNA-synt_His	492	628	2.20E-11
Glyur001406s00030095.1	PF03129.15	HGTP_anticodon	650	725	3.90E-09

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	33.850
SRR1783600	control	34.008
SRR1783602	moderate drought stress	45.746
SRR1811619	moderate drought stress	45.945

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	32.970
DRR006520	Root Summer glycyrrhizin high producing strain	33.453
DRR006521	Root Winter glycyrrhizin high producing strain	22.501
DRR006522	Root Winter glycyrrhizin high producing strain	22.345
DRR006523	Root Summer glycyrrhizin low producing strain	40.553
DRR006524	Root Summer glycyrrhizin low producing strain	40.879
DRR006525	Leaf Summer glycyrrhizin high producing strain	19.894
DRR006526	Leaf Summer glycyrrhizin high producing strain	19.748

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	58.114
SRR2868004	Drought Stress (root)	42.335
SRR2967015	Control (root)	44.313

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	27.602
SRR9715740	Leaf	35.436
SRR9715741	Leaf	31.033
SRR9715739	Root	7.909
SRR9715742	Root	41.716
SRR9715743	Root	35.022

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	58.753
SRR8749028	MeJA induced 9h	43.131
SRR8749029	MeJA induced 9h	36.575
SRR8749030	Uninduced	19.879
SRR8749031	Uninduced	13.431
SRR8749032	Uninduced	15.427

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	60.923
SRR8400027	Control - Root	54.581