Gene detail information of Glyur001406s00030086 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G14860.1 | 3.00E-52 | nudix hydrolase homolog 18 |
| NR | XP_003630930.1 | 2.29E-90 | Nudix hydrolase [Medicago truncatula] |
| COG | YP_001412181.1 | 5.00E-08 | NUDIX hydrolase [Parvibaculum lavamentivorans DS-1] |
| Swissprot | tr|Q9LQU5|NUD18_ARATH | 3.00E-65 | Nudix hydrolase 18, mitochondrial (Precursor) |
| trEMBL | tr|G7LAJ8|G7LAJ8_MEDTR | 9.00E-91 | Uncharacterized protein {ECO:0000313|EMBL:AFK37228.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01406 | 5243 | 6840 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001406s00030086.1 | PF00293.23 | NUDIX | 22 | 93 | 1.30E-09 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.000 |
| SRR1783600 | control | 0.000 |
| SRR1783602 | moderate drought stress | 0.189 |
| SRR1811619 | moderate drought stress | 0.116 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 10.274 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 10.789 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 3.743 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 3.720 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.228 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.281 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 0.843 |
| SRR2868004 | Drought Stress (root) | 5.894 |
| SRR2967015 | Control (root) | 20.126 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 12.272 |
| SRR9715740 | Leaf | 0.354 |
| SRR9715741 | Leaf | 7.515 |
| SRR9715739 | Root | 5.345 |
| SRR9715742 | Root | 23.400 |
| SRR9715743 | Root | 22.574 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 49.237 |
| SRR8749028 | MeJA induced 9h | 31.038 |
| SRR8749029 | MeJA induced 9h | 54.771 |
| SRR8749030 | Uninduced | 29.859 |
| SRR8749031 | Uninduced | 18.886 |
| SRR8749032 | Uninduced | 39.262 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 4.431 |
| SRR8400027 | Control - Root | 8.731 |