Gene detail

Gene detail information of Glyur001405s00033417

Functional Annotation

Database	Orthologs	Annotation
TAIR	AT1G73590.1	Auxin efflux carrier family protein
NR	XP_007152685.1	hypothetical protein PHAVU_004G150600g [Phaseolus vulgaris]
Swissprot	tr\|Q5SMQ9\|PIN1_ORYSJ	Auxin efflux carrier component 1
trEMBL	tr\|V7C3I7\|V7C3I7_PHAVU	Uncharacterized protein {ECO:0000313\|EMBL:ESW24679.1}

Sequence

Transcript Sequence

>Glyur001405s00033417.1
CCTCAACCCAAAATGCTTTTCCTAAGCTTTTTGTGACAATTTTAGGACCCATAGAATAGAAGGAATAGAGAGAAAGAGAGAGAGCCACACACACACACACACAAACACACACCCCAAGTTGTTTTCCAAACTCATCAAATACCCCACCCCCATTCCTTCCCATACCCCCAAATCCAAACACTGTCTAAAACAAAATGCAAAACAACAAACTGCAAAAATAAAAAAGCCAACCCCTCTCTTACCCCTTCCCTCTTAAGTGCTTTGGAGACTGCAAGTGCAACCTTGCTTGCATCTCTCAAACCTGCAAAAAAAAATAATTTATTTTTCTGTTATTCTCCTTCTGCATATTACTACACACTACACACCCACCACCCCACTTCCCCAAAACCCCAAAAACACATGCTTTCTCANCTCCCTATATATCTTTTCATCACCACCACCACCAACAACAACTCTCCCACAACTTCTTTCATCACTTTTTTTTCTTACCCTTTGTTCTGCCTCTTCTGCTAGTTTCTTTTTTTTTTTTGCTTTCATTTTTTTGTTCTGCTTCTGCTAGTTTCTGATTGAACAAAACCAACCCCAAAAAGAAAAAAGAAGAGGAAAATGATCACGTTATTAGACTTCTACCATGTGATGACAGCAATGGTGCCACTCTATGTGGCAATGATATTAGCCTATGGTTCAGTGAAATGGTGGAAAATCTTCTCCCCTGACCAATGCTCTGGCATAAACCGTTTTGTAGCACTCTTTGCAGTTCCACTCCTTTCATTCCACTTCATAGCCTCAAACAACCCTTACCAAATGAACATCCGTTTCCTAGCGGCAGACACACTCCAAAAACTCATAATCTTAGCCCTCCTTGCAGTTTGGAGCAACTTCTCCAAAAGGGGTTGTTTGGAATGGACAATAACACTATTCTCACTATCCACACTCCCAAACACACTTGTCATGGGTATCCCTTTACTCAAAGGTATGTATGGTGAGTTCTCAGGTAGCCTCATGGTTCAAATTGTGGTGCTCCAATGCATCATTTGGTACACCTTGATGCTCTTCATGTTTGAGTTTAGGGGTGCTAGGTTGTTGATCTCTGAACAATTCCCTGATACTGCTGGTTCCATTGTTTCCATCCATGTTGACTCTGATGTCATGTCATTGGATGGAAGACAACAACAAATAGAAACTGAGGCTGAGATTAAAGAAGATGGTAAACTTCATGTGACTGTGAGGAAATCCAATGCATCAAGGTCTGATATTTTCTCAAGAAGGTCTCATTCTCTTCAAGGTCTTAATTCCAATAATACCCCAAGACCTTCAAACCTCACCAATGCTGAGATTTACTCATTGCAGTCCTCTAGGAACCCAACACCAAGGGGTTCAAGTTTCAACCACACTGATTTTTACTCAATGATGAATGGTGGTGGTGGTGGAAGGAATTCAAATTTTGGTGCTTCTGATGTTTATGGTCTTTCAGCATCAGCAGCATCAAGGGGTCCAACACCAAGGAGTTCTAACTATGATGAAGATGGTGGTGGTAATAGTAAGACAAAGTTTCATTACCATTCTGGTGGAACTGGTGGACACTATCCTGCACCTAACCCTGGGATGTTTTCTCCAACTTCTGGTGCCAAAAGTGTTGTTGCTGCTAATAATGCTAATATTGCTAAGAAGCCTAATGGTCAAGCACAGCAGAAACAAGAAGACCTTCATATGTTTGTTTGGAGTTCAAGTGCTTCACCTGTTTCTGATGTGTTTGGTGGTGGCCATGAATTTGGAGGAGCTCATGATCAGAAAGAAGTGAAATTGAATGTATCACCAGGAAAAGTGGAGGGTCATAGAGACACTACTCAAGAGGACTACATGGAGAAAGATGAATTCAGCTTTGGGAATAGAGGGATGGATAGGGAAATGAATCAACATGGAGGAGCTGAGAAAGTTGGAGATGGTGGAAGGCCAAAGACCATGCCTCCAGCAAGTGTGATGACAAGGCTTATATTGATCATGGTGTGGAGAAAACTCATCAGAAACCCCAACACCTACTCTAGCCTAATTGGCCTCACTTGGTGGAATGTTGAGATGCCTGCCATAATAGCAAAGTCTATTTCCATTCTGTCAGATGCAGGGCTTGGCATGGCCATTGGGGTTGGTGGTGGTGGTAGTGGTAGTGATGATGAAAGGTCTTTCACAAAGGGTTTGTTCATGGCTTTGCAACCGAGGATCATAGCATGTGGGAATTCCATAGCAACTTTTGCAATGGCTGTGAGATTCCTTACAGGTCCAGCTGTCATGGCAGCTGCTTCCATTGCTGTTGGACTCAAAGGTGTTCTCTTTCATGTTGCAATTGTTCAGGCAGCTCTTCCCCAAGGAATTGTCCCATTTGTCTTTGCTAAGGAATATAATGTACATCCTGATATTCTCAGCACAGCTGTCATTTTTGGGATGTTGATTGCGTTGCCCATTACTCTTGCTAATGGTTGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01405	49444	53948	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0055085 transmembrane transport

cellular_component
GO:0016021 integral component of membrane

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001405s00033417.1	PF03547.13	Mem_trans	9	620	2.70E-168

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	20.566
SRR1783600	control	20.275
SRR1783602	moderate drought stress	16.460
SRR1811619	moderate drought stress	16.104

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	22.525
DRR006520	Root Summer glycyrrhizin high producing strain	21.999
DRR006521	Root Winter glycyrrhizin high producing strain	0.138
DRR006522	Root Winter glycyrrhizin high producing strain	0.138
DRR006523	Root Summer glycyrrhizin low producing strain	15.210
DRR006524	Root Summer glycyrrhizin low producing strain	14.827
DRR006525	Leaf Summer glycyrrhizin high producing strain	2.953
DRR006526	Leaf Summer glycyrrhizin high producing strain	3.007

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	21.669
SRR2868004	Drought Stress (root)	24.578
SRR2967015	Control (root)	20.707

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	2.240
SRR9715740	Leaf	1.041
SRR9715741	Leaf	0.708
SRR9715739	Root	4.619
SRR9715742	Root	15.561
SRR9715743	Root	11.913

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	67.918
SRR8749028	MeJA induced 9h	32.189
SRR8749029	MeJA induced 9h	12.915
SRR8749030	Uninduced	4.730
SRR8749031	Uninduced	1.726
SRR8749032	Uninduced	2.064

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	16.245
SRR8400027	Control - Root	21.168