Gene detail

Gene detail information of Glyur001405s00033414

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G17980.1	1.00E-62	Calcium-dependent lipid-binding (CaLB domain) family protein
NR	XP_004512742.1	4.80E-112	PREDICTED: probable ADP-ribosylation factor GTPase-activating protein AGD13-like [Cicer arietinum]
Swissprot	tr\|Q8L7A4\|AGD11_ARATH	1.00E-39	Probable ADP-ribosylation factor GTPase-activating protein AGD11
trEMBL	tr\|I1L460\|I1L460_SOYBN	1.00E-111	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA09G30750.1}

Sequence

Transcript Sequence

>Glyur001405s00033414.1
CAAAAGAAACAGAACAATTAACAAAGGGGAAACAAAAACAAATAAACAAACATTGCCTTCTTGTGGTGTTCTTCTTCTTTGTTAAGGTTTCATTCACTCACAGGTTCCCCATTTCAGAAACAACAAGAAACTCGTTTCCGTGGGCCCCACCACCCCCAAATTCCCTCCTACCCTCCCCACACGTTCCCTTCCTTTTTTGACTTCATTTCATTCAGAAAACTCATTTATATTATTATTTTATTATTGATTATTGATTAAGTATTAAAAGGAAAAAAAAATGGAGGATTCTCATTCAGCACCAAAGTCTCTGATGGAGAACCTGTTAGGCCTTCTTAGGGTTCGTGTCAAGCGTGGCGTCAACCTTGCCGTTCGTGATGTTCGTAGCAGCGATCCTTATGTTGTTATTAAGATGTACAATCAGAAACTGAAGACTCGTGTGATTAAAAAGGATGTTAATCCTGAGTGGAATGAAGACCTTACGCTTTCTATTATAGATCCTAATCACATAGTTTCACTGACTGTGTATGACCATGATACTTTTAGCAAAGACGACAAAATGGGAGATGCGGAATTCGACATCACGCCCTATATAGAAGCCTTGAGGATGGACTTAACCGGCATTCCAAGTGGCACTGTAGTCAAAAGAATACAACCAAGCAGGCAGAACTGCCTGGCGAGCGAGAGCTGCATCTACTATAGCAACGGCAAAGTTATCCAAGATATGATCCTTAGATTGCGAAATGTGGAATGCGGCGAAGTGGAAATCCAATTGCACTGGATCGATCTTCCCGGTTCTAAGGGTTTATGATCTCATAGGGTTTGTTTTATAAGTAACNTCATGCATATAAGCTGGCTTCTGCCTTTCAACTACCTGGTTTTGCAGAGTATATTGGTCAGGTTTATCTAAGACTTGAAAAACAAACTGAACTTGTATTCTTTTCAAGTCTTCCTATTTGTATCCAGTTTGTAATGTATTAGCACAGTTGAAAATTTTATTAGTGTGTTTTGGTAGAGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01405	33574	35927	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0005515 protein binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001405s00033414.1	PF00168.25	C2	19	97	1.50E-19

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	16.576
SRR1783600	control	16.484
SRR1783602	moderate drought stress	13.094
SRR1811619	moderate drought stress	12.801

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	33.595
DRR006520	Root Summer glycyrrhizin high producing strain	33.019
DRR006521	Root Winter glycyrrhizin high producing strain	36.372
DRR006522	Root Winter glycyrrhizin high producing strain	35.151
DRR006523	Root Summer glycyrrhizin low producing strain	48.150
DRR006524	Root Summer glycyrrhizin low producing strain	48.284
DRR006525	Leaf Summer glycyrrhizin high producing strain	10.506
DRR006526	Leaf Summer glycyrrhizin high producing strain	10.462

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	41.891
SRR2868004	Drought Stress (root)	49.634
SRR2967015	Control (root)	36.559

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	28.977
SRR9715740	Leaf	23.747
SRR9715741	Leaf	37.618
SRR9715739	Root	22.409
SRR9715742	Root	23.526
SRR9715743	Root	27.340

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	69.923
SRR8749028	MeJA induced 9h	46.378
SRR8749029	MeJA induced 9h	83.637
SRR8749030	Uninduced	54.247
SRR8749031	Uninduced	91.689
SRR8749032	Uninduced	84.146

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	39.326
SRR8400027	Control - Root	30.804