Gene detail information of Glyur001405s00033409 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G18210.2 | 1.00E-39 | Calcium-binding EF-hand family protein |
| NR | XP_003528969.1 | 5.43E-88 | PREDICTED: calcium-binding allergen Ole e 8-like [Glycine max] |
| COG | YP_001866396.1 | 6.00E-19 | signal transduction protein [Nostoc punctiforme PCC 73102] |
| Swissprot | tr|Q9LE22|CML27_ARATH | 3.00E-58 | Probable calcium-binding protein CML27 |
| trEMBL | tr|K7L0T2|K7L0T2_SOYBN | 2.00E-88 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA07G11384.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01405 | 1115 | 1651 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001405s00033409.1 | PF13499.1 | EF-hand_7 | 34 | 93 | 2.10E-15 |
| Glyur001405s00033409.1 | PF13833.1 | EF-hand_8 | 117 | 167 | 5.90E-14 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 4.989 |
| SRR1783600 | control | 5.173 |
| SRR1783602 | moderate drought stress | 1.508 |
| SRR1811619 | moderate drought stress | 1.432 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 9.662 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 9.152 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.312 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.304 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 5.891 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 6.130 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 36.462 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 37.180 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 23.202 |
| SRR2868004 | Drought Stress (root) | 18.657 |
| SRR2967015 | Control (root) | 13.155 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 92.849 |
| SRR9715740 | Leaf | 58.927 |
| SRR9715741 | Leaf | 64.857 |
| SRR9715739 | Root | 30.923 |
| SRR9715742 | Root | 25.331 |
| SRR9715743 | Root | 26.039 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 12.550 |
| SRR8749028 | MeJA induced 9h | 3.312 |
| SRR8749029 | MeJA induced 9h | 4.909 |
| SRR8749030 | Uninduced | 0.674 |
| SRR8749031 | Uninduced | 0.273 |
| SRR8749032 | Uninduced | 1.024 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 12.233 |
| SRR8400027 | Control - Root | 14.290 |