Gene detail information of Glyur001404s00041100 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G45020.1 | 1.00E-20 | Ribosomal L18p/L5e family protein |
| NR | KEH42192.1 | 1.20E-48 | 50S ribosomal L18-like protein [Medicago truncatula] |
| trEMBL | tr|A0A072VK45|A0A072VK45_MEDTR | 4.00E-49 | 50S ribosomal L18-like protein {ECO:0000313|EMBL:KEH42192.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01404 | 20631 | 24406 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001404s00041100.1 | PF00861.17 | Ribosomal_L18p | 3 | 113 | 1.10E-10 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 8.519 |
| SRR1783600 | control | 8.842 |
| SRR1783602 | moderate drought stress | 12.068 |
| SRR1811619 | moderate drought stress | 11.567 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 10.404 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 6.759 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 6.471 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 7.160 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 9.603 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 7.350 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 10.426 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 12.426 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 1.239 |
| SRR2868004 | Drought Stress (root) | 1.908 |
| SRR2967015 | Control (root) | 1.705 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 1.044 |
| SRR9715740 | Leaf | 2.827 |
| SRR9715741 | Leaf | 2.194 |
| SRR9715739 | Root | 0.997 |
| SRR9715742 | Root | 1.140 |
| SRR9715743 | Root | 1.623 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 1.714 |
| SRR8749028 | MeJA induced 9h | 3.897 |
| SRR8749029 | MeJA induced 9h | 0.944 |
| SRR8749030 | Uninduced | 0.355 |
| SRR8749031 | Uninduced | 1.149 |
| SRR8749032 | Uninduced | 1.329 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 3.130 |
| SRR8400027 | Control - Root | 2.113 |