Gene detail information of Glyur001402s00032146.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G53600.1 | 1.00E-30 | C2H2-type zinc finger family protein |
| NR | KEH42343.1 | 8.83E-76 | C2H2 type zinc finger transcription factor family protein [Medicago truncatula] |
| Swissprot | tr|Q9SLD4|ZAT11_ARATH | 7.00E-37 | Zinc finger protein ZAT11 |
| trEMBL | tr|A0A072VLR4|A0A072VLR4_MEDTR | 3.00E-76 | C2H2 type zinc finger transcription factor family protein {ECO:0000313|EMBL:KEH42343.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01402 | 49889 | 50519 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | C2H2 |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001402s00032146.1 | PF13912.1 | zf-C2H2_6 | 54 | 78 | 4.30E-09 |
| Glyur001402s00032146.1 | PF13912.1 | zf-C2H2_6 | 101 | 124 | 7.30E-08 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.058 |
| SRR1783600 | control | 0.166 |
| SRR1783602 | moderate drought stress | 0.467 |
| SRR1811619 | moderate drought stress | 0.346 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 1.715 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 2.007 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.177 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.173 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 4.549 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 5.081 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.000 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 5.794 |
| SRR2868004 | Drought Stress (root) | 27.919 |
| SRR2967015 | Control (root) | 27.824 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 10.594 |
| SRR9715740 | Leaf | 5.767 |
| SRR9715741 | Leaf | 9.703 |
| SRR9715739 | Root | 32.905 |
| SRR9715742 | Root | 27.190 |
| SRR9715743 | Root | 29.734 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 608.159 |
| SRR8749028 | MeJA induced 9h | 759.603 |
| SRR8749029 | MeJA induced 9h | 965.412 |
| SRR8749030 | Uninduced | 554.919 |
| SRR8749031 | Uninduced | 488.230 |
| SRR8749032 | Uninduced | 391.619 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 6.238 |
| SRR8400027 | Control - Root | 9.703 |