Gene detail

Gene detail information of Glyur001401s00032463

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G14660.1	6.00E-73	RNA polymerase Rpb7-like, N-terminal domain
NR	XP_004495324.1	6.62E-117	PREDICTED: DNA-directed RNA polymerase II subunit RPB7-like isoform X1 [Cicer arietinum]
COG	YP_001030098.1	1.00E-07	DNA-directed RNA polymerase subunit E' [Methanocorpusculum labreanum Z]
Swissprot	tr\|A6QRA1\|NRPE7_ARATH	5.00E-90	DNA-directed RNA polymerase V subunit 7
trEMBL	tr\|A0A072VL49\|A0A072VL49_MEDTR	5.00E-116	DNA-directed RNA polymerase II subunit Rpb7-like protein {ECO:0000313\|EMBL:KEH42744.1}

Sequence

Transcript Sequence

>Glyur001401s00032463.1
ATGAATAAGATCTACCAAACAATGTGTAAATTTTCTCGGCATTCTCTCTCCATTTTCTCGACTTTCTTTTCTTTTCGTTTCTCCTCTACACCGCTAAAGAGCTGCTTTCGTTTCCTCATTCTCCGACGGCGGAGGGAGCTTCCTCTTTGCTGCAACTTCATTCGATTGAAGCGTCAGATCTTGAAGCTGAGCCTTTCACGATTTTGTTCATGCGGTTCTGTTCCCAAATCCATTGTAACCCCTTCGTTTACAACTTGCAATTCAGGTGAAAAACTCTCGTTAGATCCTGCACTAAGTTTGGATTTGGCTAATATTCTGTACAAGATCAACCACAACTCTCCAAGGCCGAAAAGTTCCTCAACTGGTTGCAAAACAACTTGGGTGGAAAACAATAGAACAGAAAATCAAACACATATACAACCACTACATATTTTGCTCAGATTTGCATTGAATCTTCGACAAGGGGATTTTCTCTTGTTAACATCTTCTGGACTTGTGCTATCTCCATCTGATCATCTTTCAAGAAGATATTACCAGGAAGAGGTATCGAATATAACAATGTTTCTCAAAGTCCAACTGCCCTGGAATGTTATAATTGCCGCAGAAAATCTACAACCAGGTAGTCTCATGCTTCAGCGGGCAATCATCATCCGGCTTCTGAGTGACTTTGCTGTGAAGAAGGCAACCAAAGAAATGGGATACTTCCTTGCAGTGACTACACTGGAGAAAATAGGAGAAGGAAAAGTCAGACAACATACTGGGGATGTGCTCTTCCCTGTTGTTTTTAATGCCATTACCTTCAAGATTTTCAAAGGTGAGATATTAGAGGGTGTTGTCCACAAGGTTCTGAAGCATGGGGTTTTCATGAGATGTGGTCCGATTGAGAATGTCTATCTCTCAAGTACCAAGATGCCTGGTTACGAATTTGGCGGTGGTGAAAACCCATACTTCATGAGTCAGAAAATGCCCAAGATTGCAAAAGATGTCACAGTTCGTGCTGTAGTGATTGGTACAAAGTGGATGGAGGCAGATAGGGAATTTCAGGCATTGGTCGGCTTGGAAGGCGATTATCTAGGACCAATTTCATCTCCTGATATTTAGCTACGTTTTCTTATAGCTTGTTTTGTTACATTGTTGTGTTTCTTGCTGAGAGCAAACTCGTTTTACTGTGGAGTTTAGTCTTTTTTCTTTCCTGGTACAGATCATGGAACCCAGTTAACCAAATGACTAGAGTGGGGTGGCGTCTAGGGTGGTGAAGTAAGACTTCACCACCAAAGTGAAGTGGGACCAAGAATAAAGATGGTCATTGACTTAATAGTATTTAATGTGTATGGATAGGATGTATTACTGGTTAATTGGACAGGAGGTAAAGGGCAGAGATTAATGTATTTACAAAAGAGGTCAGATAGTGTATGTTAATTAGACAATTGCCACA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01401	43743	49953	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006351 transcription, DNA-templated

molecular_function
GO:0003899 DNA-directed RNA polymerase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001401s00032463.1	PF03876.12	SHS2_Rpb7-N	210	267	1.50E-07
Glyur001401s00032463.2	PF03876.12	SHS2_Rpb7-N	179	236	1.30E-07

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.216
SRR1783600	control	0.166
SRR1783602	moderate drought stress	1.556
SRR1811619	moderate drought stress	1.390

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	12.734
DRR006520	Root Summer glycyrrhizin high producing strain	12.551
DRR006521	Root Winter glycyrrhizin high producing strain	14.184
DRR006522	Root Winter glycyrrhizin high producing strain	14.617
DRR006523	Root Summer glycyrrhizin low producing strain	19.326
DRR006524	Root Summer glycyrrhizin low producing strain	19.019
DRR006525	Leaf Summer glycyrrhizin high producing strain	7.502
DRR006526	Leaf Summer glycyrrhizin high producing strain	7.106

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	24.209
SRR2868004	Drought Stress (root)	26.726
SRR2967015	Control (root)	29.529

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.000
SRR9715740	Leaf	0.000
SRR9715741	Leaf	0.000
SRR9715739	Root	0.040
SRR9715742	Root	0.000
SRR9715743	Root	0.034

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	7.340
SRR8749028	MeJA induced 9h	1.717
SRR8749029	MeJA induced 9h	6.845
SRR8749030	Uninduced	2.547
SRR8749031	Uninduced	8.025
SRR8749032	Uninduced	6.696

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	0.054
SRR8400027	Control - Root	0.107