Gene detail

Gene detail information of Glyur001400s00040722

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G36930.2	4.00E-89	Disease resistance protein (TIR-NBS-LRR class) family
NR	KEH23572.1	0	disease resistance protein (TIR-NBS-LRR class) [Medicago truncatula]
COG	YP_001520699.1	2.00E-11	TPR domain-containing protein [Acaryochloris marina MBIC11017]
Swissprot	tr\|Q40392\|TMVRN_NICGU	6.00E-74	TMV resistance protein N
trEMBL	tr\|A0A072U1L8\|A0A072U1L8_MEDTR	0	Disease resistance protein (TIR-NBS-LRR class) {ECO:0000313\|EMBL:KEH23572.1}

Sequence

Transcript Sequence

>Glyur001400s00040722.1
ATGTTGTACAAGGGTTATAAAATTGTTTATGCACTGACTCGGTTCACATTTTTTAGGATCGAAAGTGATGTTATCAAGGGCATAGTTGACAATGTTATCAATGTGCTAGTCGAAACAGACTTATTTATTGTTGACAATCTAGTGGGTGTAGAATTTCGTGCACAACATGTTATTCAACTCTTGAGCAGTCAACGATCAAAAGATACCTTGATCATAGGGATATGGGGGATTGGAGGGATTGGTAAAACAACCATTGCTAAATCTGTTTATAATAAAATTCGTCGAGATTTTGAAGCAATGTGCTTCCTCNCAAATGTCAGGGAAGTTTGGAAACAAGATAATGATAAAGTTTCACTACANCGACGACTCATTTCTTTCATATACAAAACAACAATAGATGANATAGATACAGTTGAATCAGGAAAAGTGATATTGCAGAAAAGGCTTCGCCAGAGAAAGATATTTCTTGTGCTTGATGATGTCAATAAATTGGAACAATTGAATGCTTTGTGTGGAAGTCATGAATGGTTTGGTNNAGGAAGTAGAATACTTATCACAACAAGAAATATGCAAATACTTAGTCAACTTAAANTTGACCATGTATATAAAATAAAAGAAATGGATGATAATGAATCTCTTGAGCTTTTTTGTCGTCATGCATTCNAGCAGCCATGTCCTGGGGAAGGTTATGTTGACCTTTCTAGAGAATTTGTTATGTACTGTGGGGGGTTGCCACTAGCTCTTAAAGTCATTGGGACCTTTTTGTTTGATAAAAGCAAAATAGAGTGGAAGAATGCACNGGAGAAACTCAAAATCATTCCCCACGATATCATAATGGAGAATCTGAGAACAAGTTTTGATGATTTAAGTGATAATGAGAAAAAAATATTCCTTGACATAACTTTTTTCTTTATTGGGATGAACCAGGATGATGTAATTCAAATATTAGAACACTCTGGGTATTCTGCAGAAGTTGGAATACTTGTCCTAGTAGAACAAAGCCTTATAACTGTAGATAGCATGAAAAGGATTGGAATGCATAATTTAGTACAAGGCATGGGAAAAGAAATCNTAAGACAAAAATCGACGACTATGGCTAAGGTAAGTAGTAGGATATGGAATGAAAGTGAAGATATCAAGAAAGTAGTTGATCATGTTACTAATCTGCTAGACATGAAAGCCTTATTCGTTGCTGAGCATCCAGTGGGGATCGAATCTCGTGTACAAGATGTTATTCAACTCTTGAACAACCAACAATCAAAAGTTCCTCTACTATTAGGGATATGGGGAATGGGAGGGATAGGAAAAACCACTATTGCTAAAGCCATTTATAATGAAATTCGTCATGATTTTGAGGCAAAGAGCTTCCTGCTAAATGTCAGNGAAGTTTGGGAACAAGAAAATGACAAAGTTTCTTTACAACAACGACTACTTTCTGATATCTACAAAACAACAAAAATAAAGATTNCTTCAGTTGAATCAGGAAAAATGATATTACAAGAAAGACTTCGCCAGAAAAAGATATTTCTTGTGCTTGACGATGTGAATGAATTGGACCAATTGAATGCTTTGTGCGGAAGTCGTNAATGGTTTGGTCAAGGAAGTCGAATAATCATCACAACAAGAGATGATGAGTTACTTAGTTGGCTAAAAGTTGACCATGTATATCCAATTAAAGTAATGGATGACAATGAATCTCTTGAGCTTTTTAGTTGGCATGCATTCAAGCAACCAAGTCCTATTGAAGGTTATGATGTCCTTTCTAGAGGTGTTGTTCAGTACTCAGCGGGATTGCCACTAGCTCTCCGGGTCATTGGGTCCTTTCTGGTGACTAAGAGAAGGAAAATACAGTGGAAGAGTGTATTGGAGAAACTCAAAATCATTCCCAATAGTAAAGTGCTAGAGAAGCTCAAAATAAGTTTTGATGGTTTAAGTGATGATGATGTGAAAGAAATATTCCTTGACATTGCNTTTTTCTTTATTGGNATGGACCANGAAGATGTAACTAAGATATTAAAAGATTGTGGGCATTTTCCAGAAATTGGAATAAGTGTGCTCGTCCAACGTAGCCTCATAACTATTGATGGAAAAAACAAGATTGGAATGCATGATTTGCTACGAGACATGGGAAGAACAATCGTAAGTGAGAAATCAAAATTGGGGGNCAAGGAGCCTAGTAGGTTATGGCGTTATGAGGATGTGTGTTCTTTGTCATCCAAAGATACTAGAAATATNGATGTTAAGGGACTGACTTTGAAGTTGTCAATGATGGACTCAACAACTTGTTTGGAAACCAAAGCATTTGAGAAGATGGATAAGTTGAGATTGCTTCAACTTGTAGGCATACGACTTGATGGAGATTACAAATATCTTTCAAGAGATCTTCGATGGCTCTGTATGCGTGGATTTCCTTTAAAATATACACCTGCAAACTTTCATCAACAAAGTTTAGTTGCCATCACCTTAAAACATTCCTCTCTGGAACGAATGTGGAAGAAGTGCCAGGTATAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01400	13980	18452	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0043531 ADP binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001400s00040722.1	PF00931.17	NB-ARC	55	314	2.50E-46
Glyur001400s00040722.1	PF00931.17	NB-ARC	405	676	2.50E-46

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	4.441
SRR1783600	control	4.421
SRR1783602	moderate drought stress	2.333
SRR1811619	moderate drought stress	2.456

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.172
DRR006520	Root Summer glycyrrhizin high producing strain	0.142
DRR006521	Root Winter glycyrrhizin high producing strain	0.000
DRR006522	Root Winter glycyrrhizin high producing strain	0.000
DRR006523	Root Summer glycyrrhizin low producing strain	0.087
DRR006524	Root Summer glycyrrhizin low producing strain	0.044
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.000
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.000

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	14.465
SRR2868004	Drought Stress (root)	20.752
SRR2967015	Control (root)	13.205

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.091
SRR9715740	Leaf	0.025
SRR9715741	Leaf	0.260
SRR9715739	Root	0.583
SRR9715742	Root	1.220
SRR9715743	Root	1.188

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	3.184
SRR8749028	MeJA induced 9h	8.063
SRR8749029	MeJA induced 9h	1.701
SRR8749030	Uninduced	1.324
SRR8749031	Uninduced	1.819
SRR8749032	Uninduced	0.526

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	11.790
SRR8400027	Control - Root	12.436