Gene detail

Gene detail information of Glyur001397s00036955

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G31970.1	5.00E-124	cytochrome P450, family 82, subfamily C, polypeptide 2
NR	XP_004510285.1	0	PREDICTED: uncharacterized protein LOC101505071 [Cicer arietinum]
COG	YP_004303682.1	6.00E-28	cytochrome P450 [Polymorphum gilvum SL003B-26A1]
Swissprot	tr\|O49394\|C82C2_ARATH	3.00E-149	Cytochrome P450 82C2
trEMBL	tr\|I1MMA3\|I1MMA3_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA16G11580.1}

Sequence

Transcript Sequence

>Glyur001397s00036955.1
TGGCTACCATATTCTCTCCAAGATTTTTAATCTTTATTCATTTTACCTGAGTCACTCTATGGATCCTCTTTATTATTCTCAAATTGTTGCAGCAATCTTAGCCATTGTACATCTTGTGCTTACATCCATTAAATCACCTAATAATGGACCTAAAGAAAACAGAGTCAACACCAAGCACAACAACAACAAAATTCCCGAACCATGTGGTGCTTTACCCTTCATAGGCCACCTCCATCTTCTGAATACTCAAGAACCATATTTCAGGACCTTTTCAGCCATGGCTGAGAAATATGGCTCAATCTTCTCCATCAGGCTCGGTTGCCACCACACCTTAGTGGTGAGTAGCAGGGGAATTGCCAAGGAATGCCTCACAACAAATGACAAAGTCTTTGCCTCAAGGCCTAACATAGCTGCAGGGAGATACATGGGCTACAACAATGCCATTTTAGCCCTTGCCCCTTATGGAAATTACTGGCGTGACATGAGAAAAATTGCCACTCTTGAGCTCTTATCAAGTCACAGGCTTGAGAAGCTAAAGCATGTGAGAGACACAGAGATATATTCTCTTGTCAAAGATTTGTACTCATTTGCAAAGAATAATATTACAAATGGTTCAAATATTAATCAAGTGCCTATTAGCAAGTTCTTAGAGAACATGACTTTGAACATAATTGTGAGGATGATAGCTGGGAAGAGGTTTAGAGGTGAAAGCATCAACCAAGAAGATAACGAAGGGTGGAGACTAAGGAAGGCAATCAAAGATGCNACATATCTAAGTGGTGTTTTTGTGGTGGCTGATGCCATTCCTTCCCTTGGTTGGTTTGATTTCCAAGGCCATGTGAGTTTCATGAAGAGGACTGCTAAGGAAATTGATTTTATTCTTGATAAGTGGATGCATGAACGTATGAGAAAGAGAGCTGATAATCAGAATGGTCAATGTGAAGATGATTTTCTTGACGTGCTGATTTCAACGTTTGAAGGGCATGATGTGATTTGTGGCCACAAGNGAGAGATAGTTATCAAAGCAAATGCATTGCTAGACACCAACATAGGAAAAGACAAATGGGTGCAAGAATCAGACATCAAGGANCTCAAATATCTGCAAGCCATTGTGAAGGAGACCCTTCGGCTATACCCACCAGCACCCTTAACAGGAATAAGAGAAGCCATTGATGATTGCCACGTGGCAGGTTACCATGTCCCCAAAGGGACTCGCTTGCTTATTAACATATGGAAGCTGCAGAGGGACCCACTGATATGGTCCAACCCTGATGAGTTTCAACCTGAGAGGTTCCTCACCACTCATTCTGATGGCATTGATTTTCAGAGTACTCAGGACTTTGGGTTTATCCCATTTAGCTATGGAAGAAGGTCATGTGCTGGCATGACATTTGGGCTGCAAGTGGTGCACTTGACTCTGGCTAGGTTGCTTCAGGGCTTTGATATATACACCAAGGAAGGTGTTCCAGTTGATATGACTGAAGGATTAGGAGTGGCCTTGCCTAAAGAAAATGCACTTGAAGTTATGCTCCAACCACGTCTTCCTTTGGAGCTTTATGAAAGCCTTTGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01397	2079	4040	+

Gene family

Gene family	subfamily
Cytochrome P450 Family	CYP82C2

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0055114 oxidation-reduction process

molecular_function

GO:0005506 iron ion binding

GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen

GO:0020037 heme binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001397s00036955.1	PF00067.17	p450	47	305	1.30E-22
Glyur001397s00036955.1	PF00067.17	p450	327	485	6.30E-46

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.382
SRR1783600	control	0.442
SRR1783602	moderate drought stress	0.375
SRR1811619	moderate drought stress	0.278

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.207
DRR006520	Root Summer glycyrrhizin high producing strain	0.205
DRR006521	Root Winter glycyrrhizin high producing strain	0.141
DRR006522	Root Winter glycyrrhizin high producing strain	0.138
DRR006523	Root Summer glycyrrhizin low producing strain	0.000
DRR006524	Root Summer glycyrrhizin low producing strain	0.000
DRR006525	Leaf Summer glycyrrhizin high producing strain	6.144
DRR006526	Leaf Summer glycyrrhizin high producing strain	5.409

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	1.286
SRR2868004	Drought Stress (root)	2.551
SRR2967015	Control (root)	2.454

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	36.650
SRR9715740	Leaf	31.395
SRR9715741	Leaf	39.963
SRR9715739	Root	0.032
SRR9715742	Root	0.517
SRR9715743	Root	0.332

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.016
SRR8749028	MeJA induced 9h	0.021
SRR8749029	MeJA induced 9h	0.000
SRR8749030	Uninduced	0.000
SRR8749031	Uninduced	0.049
SRR8749032	Uninduced	0.000

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	1.576
SRR8400027	Control - Root	0.202