Gene detail information of Glyur001396s00035590 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G36930.2 | 8.00E-16 | Disease resistance protein (TIR-NBS-LRR class) family |
| NR | AES96715.2 | 1.18E-40 | disease resistance protein (TIR-NBS-LRR class) [Medicago truncatula] |
| Swissprot | tr|Q40392|TMVRN_NICGU | 1.00E-14 | TMV resistance protein N |
| trEMBL | tr|G7KDY7|G7KDY7_MEDTR | 4.00E-41 | Disease resistance protein (TIR-NBS-LRR class) {ECO:0000313|EMBL:AES96715.2} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01396 | 44658 | 47746 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001396s00035590.1 | PF00931.17 | NB-ARC | 33 | 91 | 1.90E-12 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.045 |
| SRR1783600 | control | 0.015 |
| SRR1783602 | moderate drought stress | 0.532 |
| SRR1811619 | moderate drought stress | 0.490 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 3.929 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 3.782 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.000 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 3.166 |
| SRR2868004 | Drought Stress (root) | 6.484 |
| SRR2967015 | Control (root) | 3.010 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 1.761 |
| SRR9715740 | Leaf | 1.613 |
| SRR9715741 | Leaf | 2.655 |
| SRR9715739 | Root | 0.000 |
| SRR9715742 | Root | 0.089 |
| SRR9715743 | Root | 0.171 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 20.733 |
| SRR8749028 | MeJA induced 9h | 12.081 |
| SRR8749029 | MeJA induced 9h | 7.319 |
| SRR8749030 | Uninduced | 55.904 |
| SRR8749031 | Uninduced | 111.775 |
| SRR8749032 | Uninduced | 18.542 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 0.978 |
| SRR8400027 | Control - Root | 1.337 |