Gene detail information of Glyur001396s00035587 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G09530.1 | 3.00E-04 | hydroxyproline-rich glycoprotein family protein |
| NR | XP_009125365.1 | 9.08E-95 | PREDICTED: periaxin-like [Brassica rapa] |
| COG | YP_004320956.1 | 4.00E-11 | LPXTG-motif cell wall anchor domain-containing protein [Aerococcus urinae ACS-120-V-Col10a] |
| trEMBL | tr|D7M248|D7M248_ARALL | 6.00E-89 | Putative uncharacterized protein {ECO:0000313|EMBL:EFH49668.1} (Fragment) |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01396 | 36173 | 37204 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| -- | -- | -- | -- | -- | -- |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 13.595 |
| SRR1783600 | control | 14.697 |
| SRR1783602 | moderate drought stress | 10.115 |
| SRR1811619 | moderate drought stress | 11.071 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.492 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.213 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.090 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.090 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 96.546 |
| SRR2868004 | Drought Stress (root) | 32.058 |
| SRR2967015 | Control (root) | 42.649 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 0.044 |
| SRR9715740 | Leaf | 0.092 |
| SRR9715741 | Leaf | 0.471 |
| SRR9715739 | Root | 4.944 |
| SRR9715742 | Root | 10.665 |
| SRR9715743 | Root | 6.643 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.000 |
| SRR8749028 | MeJA induced 9h | 0.033 |
| SRR8749029 | MeJA induced 9h | 0.000 |
| SRR8749030 | Uninduced | 1.197 |
| SRR8749031 | Uninduced | 4.984 |
| SRR8749032 | Uninduced | 0.528 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 35.487 |
| SRR8400027 | Control - Root | 25.240 |