Gene detail information of Glyur001396s00035586 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G26880.1 | 2.00E-47 | Ribosomal protein L34e superfamily protein |
| NR | NP_001236831.1 | 2.95E-78 | uncharacterized protein LOC100305798 [Glycine max] |
| COG | YP_004781793.1 | 3.00E-07 | 50S ribosomal protein L34e [Pyrolobus fumarii 1A] |
| Swissprot | tr|P40590|RL34_PEA | 4.00E-77 | 60S ribosomal protein L34 |
| trEMBL | tr|C6SWN5|C6SWN5_SOYBN | 1.00E-78 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA09G37360.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01396 | 28897 | 30709 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001396s00035586.1 | PF01199.13 | Ribosomal_L34e | 1 | 96 | 2.20E-35 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 172.296 |
| SRR1783600 | control | 170.468 |
| SRR1783602 | moderate drought stress | 78.938 |
| SRR1811619 | moderate drought stress | 77.624 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 517.869 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 509.245 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 288.202 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 278.276 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 455.782 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 450.526 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 101.528 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 101.104 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 624.595 |
| SRR2868004 | Drought Stress (root) | 412.476 |
| SRR2967015 | Control (root) | 386.071 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 196.356 |
| SRR9715740 | Leaf | 158.682 |
| SRR9715741 | Leaf | 139.751 |
| SRR9715739 | Root | 308.568 |
| SRR9715742 | Root | 267.416 |
| SRR9715743 | Root | 258.179 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 1026.148 |
| SRR8749028 | MeJA induced 9h | 206.910 |
| SRR8749029 | MeJA induced 9h | 671.215 |
| SRR8749030 | Uninduced | 71.824 |
| SRR8749031 | Uninduced | 89.670 |
| SRR8749032 | Uninduced | 125.357 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 396.546 |
| SRR8400027 | Control - Root | 354.709 |