Gene detail information of Glyur001395s00031212 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G14345.1 | 3.00E-58 | NAD(P)-linked oxidoreductase superfamily protein |
| NR | XP_003613641.1 | 4.63E-93 | Putativ eribonuclease P [Medicago truncatula] |
| COG | NP_681391.1 | 4.00E-39 | eribonuclease P [Thermosynechococcus elongatus BP-1] |
| trEMBL | tr|G7KB58|G7KB58_MEDTR | 2.00E-93 | NAD(P)-linked oxidoreductase-like protein {ECO:0000313|EMBL:AES96599.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01395 | 29193 | 32210 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001395s00031212.1 | PF03703.9 | bPH_2 | 112 | 181 | 3.40E-15 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 12.658 |
| SRR1783600 | control | 12.751 |
| SRR1783602 | moderate drought stress | 13.748 |
| SRR1811619 | moderate drought stress | 13.505 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 8.784 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 10.416 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 5.371 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 5.339 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 5.784 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 5.198 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 130.459 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 127.766 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 5.699 |
| SRR2868004 | Drought Stress (root) | 6.647 |
| SRR2967015 | Control (root) | 3.259 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 54.788 |
| SRR9715740 | Leaf | 79.208 |
| SRR9715741 | Leaf | 50.339 |
| SRR9715739 | Root | 13.624 |
| SRR9715742 | Root | 12.430 |
| SRR9715743 | Root | 11.711 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 10.477 |
| SRR8749028 | MeJA induced 9h | 2.575 |
| SRR8749029 | MeJA induced 9h | 2.451 |
| SRR8749030 | Uninduced | 0.560 |
| SRR8749031 | Uninduced | 0.375 |
| SRR8749032 | Uninduced | 0.861 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 8.357 |
| SRR8400027 | Control - Root | 6.980 |