Gene detail information of Glyur001394s00037113 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G13570.1 | 7.00E-34 | F-box/RNI-like superfamily protein |
| NR | AFK36982.1 | 5.47E-119 | unknown [Medicago truncatula] |
| Swissprot | tr|Q9FZ70|FDL1_ARATH | 3.00E-40 | F-box/FBD/LRR-repeat protein At1g13570 |
| trEMBL | tr|I3S9P0|I3S9P0_MEDTR | 2.00E-119 | Uncharacterized protein {ECO:0000313|EMBL:AFK36982.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01394 | 46235 | 49829 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001394s00037113.1 | PF00646.28 | F-box | 15 | 51 | 1.90E-05 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 7.116 |
| SRR1783600 | control | 7.281 |
| SRR1783602 | moderate drought stress | 6.806 |
| SRR1811619 | moderate drought stress | 6.377 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 7.300 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 6.819 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 6.053 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 5.744 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 2.700 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 2.492 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 5.471 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 5.276 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 3.998 |
| SRR2868004 | Drought Stress (root) | 4.487 |
| SRR2967015 | Control (root) | 4.714 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 6.208 |
| SRR9715740 | Leaf | 5.807 |
| SRR9715741 | Leaf | 10.109 |
| SRR9715739 | Root | 0.931 |
| SRR9715742 | Root | 7.691 |
| SRR9715743 | Root | 5.814 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 2.717 |
| SRR8749028 | MeJA induced 9h | 1.787 |
| SRR8749029 | MeJA induced 9h | 1.090 |
| SRR8749030 | Uninduced | 0.804 |
| SRR8749031 | Uninduced | 0.904 |
| SRR8749032 | Uninduced | 0.397 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 13.515 |
| SRR8400027 | Control - Root | 18.049 |