Gene detail information of Glyur001394s00037110 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G13570.1 | 6.00E-33 | F-box/RNI-like superfamily protein |
| NR | XP_003613588.1 | 6.99E-96 | F-box/FBD/LRR-repeat protein [Medicago truncatula] |
| Swissprot | tr|Q9FZ70|FDL1_ARATH | 1.00E-36 | F-box/FBD/LRR-repeat protein At1g13570 |
| trEMBL | tr|G7K9S5|G7K9S5_MEDTR | 3.00E-96 | F-box/FBD-like domain protein {ECO:0000313|EMBL:AES96546.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01394 | 34744 | 36563 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001394s00037110.1 | PF00646.28 | F-box | 23 | 58 | 0.0001 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.595 |
| SRR1783600 | control | 0.539 |
| SRR1783602 | moderate drought stress | 0.701 |
| SRR1811619 | moderate drought stress | 0.562 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 1.363 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 1.142 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 1.021 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.724 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.009 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.002 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.665 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.708 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 0.000 |
| SRR2868004 | Drought Stress (root) | 0.000 |
| SRR2967015 | Control (root) | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 3.179 |
| SRR9715740 | Leaf | 1.539 |
| SRR9715741 | Leaf | 3.593 |
| SRR9715739 | Root | 0.048 |
| SRR9715742 | Root | 1.405 |
| SRR9715743 | Root | 1.494 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.000 |
| SRR8749028 | MeJA induced 9h | 0.000 |
| SRR8749029 | MeJA induced 9h | 0.000 |
| SRR8749030 | Uninduced | 0.000 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 4.253 |
| SRR8400027 | Control - Root | 3.959 |