Gene detail

Gene detail information of Glyur001393s00036456

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G13050.1	8.00E-75	5-formyltetrahydrofolate cycloligase
NR	XP_004489971.1	6.74E-144	PREDICTED: 5-formyltetrahydrofolate cyclo-ligase-like isoform X1 [Cicer arietinum]
COG	NP_242283.1	2.00E-15	5-formyltetrahydrofolate cyclo-ligase [Bacillus halodurans C-125]
Swissprot	tr\|Q8L539\|5FCL_ARATH	3.00E-94	5-formyltetrahydrofolate cyclo-ligase, mitochondrial (Precursor)
trEMBL	tr\|V7AX39\|V7AX39_PHAVU	6.00E-128	Uncharacterized protein {ECO:0000313\|EMBL:ESW10134.1}

Sequence

Transcript Sequence

>Glyur001393s00036456.1
CAATAATGTATACTACTTCATCCTTTCCCGAAGAGAGTACCGAGAGACTGAGAGAGACACACCCTGCGGTTAGCCGTTCCCCACCTTCCTCTTCACTCTCCAATCTTTGCTCTTCCTCAAGCCTTCTGCTGTGTGCCTCTGCCCTTCCATCTTTGATTCCTCTTCAGTCTTTGCTCTTCTTCACATCGTGACTCACAGCCTTCACTTCCTTCGATTCGTGACTCACAGTCTTTGCTCTCCTTCGATTTCGCCGTGCTCTTCCGTAGATCCGCCGTTCTCCGTTCGATGTTCACCGCGCAGGGAGTCCGTCGATCTGCCGTCGCTGTCACCGCTGTTCATCCTTGAAGTTGCTAGAATATGTTTATTTTCGATCTGCTTACTCTGGTTATTGTTCATCCTTGAAGTTGCTAAACCTGGACTGAGATTGTTGCTAAGTTTTGTGTTTAAAGTGTTAAATTTTGTACTATGACGACACAGCGGTATACAAGAGCTGCCACGAAAGGTGTGGTTGCTAGCGCACAGTTGTGGCGGCCAAGTGGGCTGTTGAGGATGGCGAGTAATTTTAACAGCAGCAGCAGCAACCCTGATGACGTGGANTCTATATTCAAACAGAAGCGAATGCTTCGGACTCAGGTCAGAAAAACCCTCAAGGCCATCGACCCGTCCCTCAGATCTCAACAAGGTAGGCACAATCTAATCTTCTCTCTTTTGTCATTTTTCGTTTTTGTTTTTTATTCCTTCAAATTCATTTCTTTTCCAGATAACNCCATTCAGGACATAATTTTGAGAGCTCCGTGGTTCCAATCTAGTCTTAGGTTATGCGCATACATTAGCTGCAGTGCTCTACGGGAAGTCGATACTTTCAAACTCTTGTCAGAAATTTTGCAACCTTCGCTCAGTGGTGGAAAAAAACTCTATGTGCCACGCGTGGAGGATAAAAATAGTCACATGCGGATGCTTAACATATCGCGTATTGATGATCTTATCGCAAACTCAATGGACATCTTAGAACCAGCTCCAGTTGATGCTGATGGAAATGCACGTGAAGATGTTATGCAGGCGAGTGACCCAGTTGATTTATTCCTTTTACCTGGATTGGCATTTGACAGATCTGGAAGACGTTTAGGCCGTGGTGGAGGTTACTATGATACCTTCCTGAAAAATTACCAGGACCTTGCAAAGACACGGAATTGGAAGCAACCCTTGCTCGTTGCACTGTCATATTCCCAACAAATACTGGATGAAGGAGTAATACCAATTACTTCATCTGATGCTCCAATTGACGCTCTTGTATCTCCAGAAGGCGTTATTCCCATCAGTACTGCTGCCTTCAACAGGTAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01393	43386	56062	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K01934	MTHFS	EC:6.3.3.2	One carbon pool by folate	map00670

Gene Ontology

Not hits found.

Not hits found.

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001393s00036456.1	PF01812.15	5-FTHF_cyc-lig	100	277	9.10E-27

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	28.227
SRR1783600	control	28.175
SRR1783602	moderate drought stress	27.835
SRR1811619	moderate drought stress	27.761

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	19.654
DRR006520	Root Summer glycyrrhizin high producing strain	19.790
DRR006521	Root Winter glycyrrhizin high producing strain	17.022
DRR006522	Root Winter glycyrrhizin high producing strain	16.785
DRR006523	Root Summer glycyrrhizin low producing strain	20.323
DRR006524	Root Summer glycyrrhizin low producing strain	20.425
DRR006525	Leaf Summer glycyrrhizin high producing strain	9.595
DRR006526	Leaf Summer glycyrrhizin high producing strain	9.793

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	26.043
SRR2868004	Drought Stress (root)	28.601
SRR2967015	Control (root)	28.635

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	17.222
SRR9715740	Leaf	24.050
SRR9715741	Leaf	22.519
SRR9715739	Root	17.720
SRR9715742	Root	20.888
SRR9715743	Root	21.186

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	20.457
SRR8749028	MeJA induced 9h	16.216
SRR8749029	MeJA induced 9h	7.971
SRR8749030	Uninduced	5.415
SRR8749031	Uninduced	1.921
SRR8749032	Uninduced	2.657

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	26.541
SRR8400027	Control - Root	28.215