Gene detail information of Glyur001391s00041019 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G23160.1 | 1.00E-49 | cysteine-rich RLK (RECEPTOR-like protein kinase) 8 |
| NR | XP_009357571.1 | 1.95E-89 | PREDICTED: uncharacterized protein LOC103948287 [Pyrus x bretschneideri] |
| Swissprot | tr|P92519|M810_ARATH | 4.00E-37 | Uncharacterized mitochondrial protein AtMg00810 |
| trEMBL | tr|A5B8B4|A5B8B4_VITVI | 7.00E-92 | Putative uncharacterized protein {ECO:0000313|EMBL:CAN69815.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01391 | 60589 | 64809 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001391s00041019.1 | PF14244.1 | UBN2_3 | 1 | 113 | 2.80E-29 |
| Glyur001391s00041019.1 | PF07727.9 | RVT_2 | 315 | 371 | 6.80E-21 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 6.807 |
| SRR1783600 | control | 6.871 |
| SRR1783602 | moderate drought stress | 2.963 |
| SRR1811619 | moderate drought stress | 2.927 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 6.413 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 6.306 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 11.292 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 10.600 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.456 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.585 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 4.156 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 4.668 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 7.106 |
| SRR2868004 | Drought Stress (root) | 11.552 |
| SRR2967015 | Control (root) | 9.934 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 0.000 |
| SRR9715740 | Leaf | 0.000 |
| SRR9715741 | Leaf | 0.000 |
| SRR9715739 | Root | 0.000 |
| SRR9715742 | Root | 0.000 |
| SRR9715743 | Root | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 1.031 |
| SRR8749028 | MeJA induced 9h | 4.315 |
| SRR8749029 | MeJA induced 9h | 1.185 |
| SRR8749030 | Uninduced | 0.830 |
| SRR8749031 | Uninduced | 1.052 |
| SRR8749032 | Uninduced | 0.556 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 3.187 |
| SRR8400027 | Control - Root | 2.400 |