Gene detail

Gene detail information of Glyur001390s00030762

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G80550.1	1.00E-134	Pentatricopeptide repeat (PPR) superfamily protein
NR	XP_004486635.1	0	PREDICTED: pentatricopeptide repeat-containing protein At1g80550, mitochondrial-like isoform X1 [Cicer arietinum]
Swissprot	tr\|Q9M8M3\|PP136_ARATH	4.00E-170	Pentatricopeptide repeat-containing protein At1g80550, mitochondrial (Precursor)
trEMBL	tr\|G7IMC4\|G7IMC4_MEDTR	0	PPR containing plant-like protein {ECO:0000313\|EMBL:AES68234.2}

Sequence

Transcript Sequence

>Glyur001390s00030762.1
ATGCGTTGGGTGATTCCGATTTCATCCTCAACAACTCGCCTCCTCCGATTCCGACTCGTACCCTTTCAAACCACCCAACAAAACAACTTCTCCACACTAAAAAACCCAACAACCTCCGTTTCCGTTCCCGTTGACCACACAACCGTTCGCGAAACGCTGTTATCATTCAACAACGACTGGAAGCGCGCAGTTGAATTCTTCAACTGGGTAGAATCCGAACTCAAATTCCACCACACCACCGAAACCTTCAACCTCGTACTCGACATCCTCGGAAAGTTCTTCGAGTTCCAACAATGCTGGGAACTCATCCACCACCGCATGATAACCAACCCTTCTTCCTTCCCCAACCACACCACCTTCCGCGTGTTGTTCAAACGCTACGCCGCCGCACACGCCGTCGACGATGCCNTTAACACCTTCAATAGACTCAACGAGTTCAACCTACAAGACGAAACCTCCTTCTCAAACCTCATCGATGCTCTCTGCGAGCACAAACACGTCCTCGAGGCACAGGATTTGGTTTTCGCCACCAAAAAGACCCTAACTTTGAACTTAAACACGGGTGGGGTTGTTGTGAACACTAAGATCNACAACATTGTTCTTCGTGGGTGGTTCAAATTGGGGTGGTGGAGTAAGTGTTGGGAGTTCTGGGAGATGATGGATAAAAAGGGTGTTCAAAAGGATCTTCACTCATACTCAATTTACATGGATATTTTGTCCAAAGGGGGTAAGCCTTGGAAGGCTGTGAAACTCTTCAAGGAGATGAAGAGAAAAGGTATAAAATTAGATGTTGTTGTTTATAACATTGTGATTCGTGCCATTGGTTTATCACAAGGGGTTGATTTCTCTATTAGGCTCTTTCGTGAGATGAAGGAGTCAGGGATTAACCCAACTGTTGTTACTTATAACACCATCATAAGGCTTTTGTGTGATAGTTATAGGGTTAAGGAGGCACTTGCATTGCTTCGTACCATGCCACACAATGGTTGTTTCCCTAATGCTGTTTCATATAACTGCTTTTTTGCTTGTTTTGAGAAGCCTAAAGAGATCATTGACCTGTTTGATGGCATGATCCAAANCGGGGTTCGCCCCGGTATGGATACCTATGTCATGCTGCTGAGGAAGTTTGGGAGGTGGGGGTTTCTTAGATTGGCTTTTATGGTGTGGAATAAGATGGAAGAGCTTGGGTGTAGTCCGGATGAGGCTGCTTACAATGCTTTGATTGATGCTCTTGTGGACAAAGGGTTGATAGATATGGCTAGGAAGTTCAGCGGCTTATGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01390	13588	15094	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

Not hits found.

Not hits found.

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001390s00030762.1	PF01535.15	PPR	153	173	0.75
Glyur001390s00030762.1	PF01535.15	PPR	198	225	0.005
Glyur001390s00030762.1	PF13041.1	PPR_2	227	273	4.00E-11
Glyur001390s00030762.1	PF13041.1	PPR_2	297	344	2.40E-12
Glyur001390s00030762.1	PF13041.1	PPR_2	368	412	2.20E-07

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	7.932
SRR1783600	control	7.711
SRR1783602	moderate drought stress	9.628
SRR1811619	moderate drought stress	10.048

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	5.808
DRR006520	Root Summer glycyrrhizin high producing strain	5.603
DRR006521	Root Winter glycyrrhizin high producing strain	10.065
DRR006522	Root Winter glycyrrhizin high producing strain	9.218
DRR006523	Root Summer glycyrrhizin low producing strain	2.940
DRR006524	Root Summer glycyrrhizin low producing strain	2.355
DRR006525	Leaf Summer glycyrrhizin high producing strain	3.225
DRR006526	Leaf Summer glycyrrhizin high producing strain	3.185

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	7.330
SRR2868004	Drought Stress (root)	6.935
SRR2967015	Control (root)	6.452

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.973
SRR9715740	Leaf	2.187
SRR9715741	Leaf	2.090
SRR9715739	Root	2.692
SRR9715742	Root	2.758
SRR9715743	Root	2.654

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	4.884
SRR8749028	MeJA induced 9h	6.717
SRR8749029	MeJA induced 9h	2.060
SRR8749030	Uninduced	1.588
SRR8749031	Uninduced	1.298
SRR8749032	Uninduced	0.781

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	6.632
SRR8400027	Control - Root	5.411