Gene detail

Gene detail information of Glyur001386s00028381

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G53350.1	5.00E-45	CLP protease regulatory subunit X
NR	XP_004512653.1	0	PREDICTED: ATP-dependent Clp protease ATP-binding subunit ClpX-like [Cicer arietinum]
COG	YP_008836352.1	3.00E-34	ATP-dependent protease [Pandoraea pnomenusa 3kgm]
trEMBL	tr\|I1MQ99\|I1MQ99_SOYBN	1.00E-165	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA16G33080.1}

Sequence

Transcript Sequence

>Glyur001386s00028381.1
CGGGTGGCTGCAAATACAAGAGAAAGTGTAGAAGAAAGAATGACATCCAGTTAAGAAAAATGGATATACGGTCAAACCCAAAATATAGAAAAACAAAAAAGATACCCAAACCACCAAACCACACCACACACAAGCAGTAACTGGTTAACTGCATCATCATCACCCACGTTTTTTGACGCATTTCCATCGCCCACTACAACACACCATATCAGAGAGATGGAGAGAGAGACAAGTGTATATGTGTGTGTGTAATATCATGTATTTTCATTCACTTTGCGTTTGTGTTTGGCAGCTTCTTTTCTTCACCGATAAACACTCCTAAACTTTATCTTATTGCTCAATCTTCTCCCCTCCAATCCAATTTCCCCTTCTTTCTCTCTCCCTCTCTCTTTCTCTCTCCTTCACTTTCTACCTCACACACGAATCGCATAAATTAATNCATACCCCACTCTCCAAATCACGCTTATAGATCCAAAGTTCTTCTCTTTTTCACCATTCCTGGCTAAATCCTCAATTGGGTCACTCAAATTCCAAACATNAAATAACAATCAATCCGGGTTTTCTTTGTCAATTCCAAAGTTANAATTTTTCTCTATTTTTTGGATCATACCCATGTCTAGAATCTTCTCGAGATGGAAGAAGGCGAAGGAAATGGCGTCAATTCCGGGGACCCACATGGCCGTTGGGTCGGGTAACCGCCGAACTGGGTTCGGGTCAACATACCGGTTGAACCGGGTCCGCACAATCTCGACCCATCTGAACCACATCATCGTCGCAGGCGGCAGCGCTGCCCACCACCGCCGGCGGGAGGCTCTGGTCGGCGTCCAGGAGAGGTACAAGTGGGACCGNGGCGGGACATATGACAACCCGACCCGGAAGATCTGGGCCGAGGCTAATTGCCCACGTTGCACCAAAGACATGAACCTGTTGTTCTCCAATCGCACGTTTCCAACAAGTGATTCTGATTGTGGTGGTGATGGTTCTTCTTCTTCTAACAATTTGGATCCTCATGTTGGTGTNGGTGGTGGTGGAGAAGGTGGTGGTTACCAAGCTGTGAATCTGTGTCCAACTTGTAAAACTGCTTATTACTTTCGCCCTTACAACACTACACCTTTGCAAGGTACCTTTGTGGAGATTGGTAGGGTCACTAGTAGTAATAATCACAATAATGGCAAGTCTCAATCACATAGGAGGATCACACATGGAAAAAGTGGTGGCAAAGAGAGTGGTAAGAATAATAATGGTCATGGAGGAGGAGAGGATTTTGGGCTTAAGGGTGGTAGTGCTAGTAATTGGCTTGAAGTTTCATTGTGGGACACTTTGAGATCTTACAATGGTGGTGGTGGTAATAATGGGGAGCCACCTGAGACATGGCCTTCTCCACCACCNCCAGCTGGTGGTAATGGGAATGGGAATGGTTTGGCTGTGCATACTCCTCCAGGCCCTCCTTTTGCACCTGGGATTAATGTTATCCGGTCTTCTGGGCCGCGGGAGGGAGGTTCGGGTGGGGGCAGCGGTGGAGGTGGTGGCAATGGAGAGAAGACCACATGGGGAGGGTCTAATTTGGGNAAGGATTTGCCCTCACCAAAGGAGATCTGCAAGGGTCTTGACAAGTTTGTTATTGGCCAAGACAGAGCCAAGAAGGTACTTTCTGTAGCTGTTTATAACCACTATAAAAGAATATACCATGCCACTTTACAGAAAGGGTCCATCACAGATTCAGGAGTTTCAGAAGTAGCAGATGATGACGATAATGTNGAGCTTGAAAAGAGTAATGTTCTCTTGATGGGTCCAACAGGGTCAGGGAAGACATTACTTGCAAAAACACTAGCTCGATTTGTGAATGTTCCATTTGTCATTGCTGATGCAACAACCTTAACACAGGCAAGTATGCATTCTTTGATGAGATAATGTTAGAATTTGTTGAACTGAAGTGTTCAGCATAAACTAATTTAAAGTCACTAAACCATCAATTTTCCTNTGCCAAGGATCTTAAACTTTTACTTATTTGAGTGATTAAACCACATTTTGCATGGTGTGCTAAACACAATCAATTTTCACTTTCAAATGAAACTCTGGGTATTAGATAGCAGTAACTGTTTCTGATTTGGTTTTGTAGCTATCTGACTCATTTGCCTTGGGACAATTTTTTTTTGTTTTGTATTTTAACCTAAAAGAGGAAATGTTCTAATTTTCAGGCAGGTTATGTTGGAGAAGATGTCGAATCGGTACTATATAAACTACTTGCGGCAGCAGATTTCAATGTTGCAGCAGCTCAACAAGGAATAATTTACATTGATGAAGTTGACAAGATAACTAAGAAGGCCGAGAGCTTAAATATCAGCCGAGATGTTTCTGGTGAGGGTGTTCAGCAGGCATTATTAAAAATGCTGGAAGGAACTATAGTAAATGTTCCAGAGAAAGGAGCCAGGAAACATCCACGGGGTGATAACATTCAGATGGACACAAAAAATATTCTTTTTATATGTGGTGGGGCATTTATTGATCTTGAGAAAACCATTTCAGAGAGACGACAAGATTCTTCTATTGGTTTCGGAGCACCAGTTCGTGCCAACATGAGAACTGGTGGAATAATAGATTCTGCAGTAACATCATCTTTACTTGAATCGGTGGAAAGTTCTGATCTTATTGCATATGGCCTCATACCAGAGTTTATTGGACGATTCCCCATCTTAGTTAGCTTGTCAGCTTTAACTGAAGACCAACTTATGCAGGTCCTCACAGAACCCAAAAATGCTCTTGGTAAACAGTACAAGAAGTTATTTAGCATGAATAATGTAAAGNTACACTTCACAGAGAAAGCTCTGAGACTGATAGCAAAGAAAGCAATGGCCAAAAATACTGGTGCNAGGGGTTTAAGGGCCCTACTGGAAACCATTTTAACCGAAGCCATGTTCGAGATTCCAGATATCAAGACAGGAAGCGACCGGGTTGATGCAGTAGTTGTTGATGAAGAATCAGTAGGATCAATAAATGCCCCTGGATGTGGAGGGAAAATTCTCCGTGGAGATGGTGCTTTGGAGCAGTACCTAGCTAAGATGAAGGATTCAGCGGTGAATGGTGAAGTAGCTGAATCAGACTTGCAAGAGGGGGATTCGGATATTTCATCAAGAGCCATGAGCATGTAGCATTATATTCAGTGTATAATTTATCATNGTCATTGTTATTTGTAAAAAATCAAATCAAAAAAAAATTTGATGTAATTAATCCTTGTATAACAGCATAGCTACTGGTCTAAGTTCACTGGATAGGAAGGAAGGAAATAAGAAAAGGAAAAAAAAGAAAAGAAGAAAGGTGTAGTGTAGCACTGCTAATTAAGGCGGCACATTATACAGAATTTCAATTGCTTTTTTGAGGAAGCCTAACTGAAGTCANTTTTTTTCTCTCTTGTACCACTGTATCTCGTTTAGATTAAGGATCATTATGTTTGTTGTAGTCATTCCTCCACCCACTTTTTGTGTGTGTGTGTGTGACAAGGCTAAAAGTTATGCCTTGGTACAATAGCCCTAAAAATATATAAAAATCAAATAATAATAATAATATTGAGAATAGGAGAGAGAGCTCTAGAGGCAGAATGAGGGAGAGAAGAAAGAATGAGAAAAATAGGAGAGGAGAGCTAGAGCAGCAAAAAAAATGTATGAAGGGAGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01386	43589	51371	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0005524 ATP binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001386s00028381.1	PF07724.9	AAA_2	385	426	4.30E-06
Glyur001386s00028381.2	PF07724.9	AAA_2	9	169	8.60E-33
Glyur001386s00028381.2	PF10431.4	ClpB_D2-small	176	246	5.90E-14

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	9.249
SRR1783600	control	9.081
SRR1783602	moderate drought stress	9.458
SRR1811619	moderate drought stress	9.363

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	13.539
DRR006520	Root Summer glycyrrhizin high producing strain	13.744
DRR006521	Root Winter glycyrrhizin high producing strain	16.150
DRR006522	Root Winter glycyrrhizin high producing strain	15.502
DRR006523	Root Summer glycyrrhizin low producing strain	11.960
DRR006524	Root Summer glycyrrhizin low producing strain	12.023
DRR006525	Leaf Summer glycyrrhizin high producing strain	20.741
DRR006526	Leaf Summer glycyrrhizin high producing strain	20.864

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	26.315
SRR2868004	Drought Stress (root)	27.475
SRR2967015	Control (root)	25.693

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	25.845
SRR9715740	Leaf	28.013
SRR9715741	Leaf	29.979
SRR9715739	Root	2.102
SRR9715742	Root	12.279
SRR9715743	Root	10.065

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	26.851
SRR8749028	MeJA induced 9h	26.808
SRR8749029	MeJA induced 9h	25.676
SRR8749030	Uninduced	36.536
SRR8749031	Uninduced	52.119
SRR8749032	Uninduced	46.045

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	24.396
SRR8400027	Control - Root	21.792