Gene detail

Gene detail information of Glyur001386s00028379

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G64810.2	3.00E-146	Arabidopsis thaliana protein of unknown function (DUF794)
NR	XP_003548251.1	0	PREDICTED: APO protein 1, chloroplastic-like [Glycine max]
Swissprot	tr\|Q9XIR4\|APO1_ARATH	0	APO protein 1, chloroplastic (Precursor)
trEMBL	tr\|I1MQ97\|I1MQ97_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA16G33060.1}

Sequence

Transcript Sequence

>Glyur001386s00028379.1
CATGAATATGGGCAACAGTTGAATGCAGGGAATCCATTTCCAGAATGAGCGTTGGGCGTTGCTACAAACATCTCTGCTTGTGGGCTCTGCGCTCAAACCCTCTACCCTTCTCTGCCACCATCAATTTCTCTAATTCGTTTCTTCATTAAAAGTTAACAACTTGAACAAGCAGCAACATTAAAAATCGTTTCTTTATCTCATCATCTTCCTCTTTCGCAGCATACTCCAATAAAAACACACACATGGGGCTTCCACTAGTTTCTTNTGCATTATGGGATCCCTCTCATAACCGTGTTTCCCTCACCATGGATTTTATGGGGCCACACTACCTATCAGCTTCCAAGTCATATTCTCCTCCTTTGAAGTTTAAGTGTCAACAATTCCACAAGGGTGGATCAACACTGGCTGGAGTTTTACTTTGTGCGGATCGGAAGCTCAGAGGCGATGAAACTATGAGGAGACAAAAACAGTTAAACCAAAATGTGGATTTCCCACCAAAATTACCCAAGAAAAAGAAGAAACCATACCCTATTCCCATTAAGAAAATCAAACAGGCTGCAAGGGAGGACAGAAAACTTGCACACATGGGAATAGAGAAACCTCTTGAACCTCCGAAGAACGGATTGCTTGTTCCGGACCTAGTTCCTGTTGCCTATGAAGTATTTCATGCTTGGAAGCTTTTGATCAAAGGTCTTGCCCAGCTCTTGCATGTCATTCCTGTACATGGCTGTAGTGAATGCTCAGAAGTCCATGTGGCTGCGACCGGTCACCGCATTCTGGATTGTGAAGGTCGTACCAGTTCAAAGCGTCATAGTTCTCATGCATGGGTCAAGGGTTCCATCAATGATATACTTGTCCCAATTGAGTCCTATCATCTCTTTGACCCCTTTGGTAGGCGCATTAAGCATGACACGCGGTTTGAATACGACCGGATTCCAGCTGTTGTGGAGCTATGCATTCAAGCCGGTGTGGATATCCCAGAGTATCCTTCACGCAGAAGGACCAATCCCGTACGAATGTTAGGGAGGAGAATACTTGACAGAGGTGGACATTTAGAGGAGCCTAAATCGTGGCGCTCTGCAGAGACCTCTTCAGTCATCGACTTTGATACTTACAGAGCTTCCGAGCGGTTTCCACGACCACCATTGACAGATGTACCTAAAATCGCCCAAGAAACAATCGGTGCATATGAAACTGTTAGAAAGGGTGTTAGGAAGTTGATGAGGAAATACACGGTGAAAGCGTGCGGCTATTGCTCGGAGGTTCACGTGGGACCGTGGGGTCACAATGCTAAGATGTGTGGATCATTTAAGCACCAGTGGAGAGATGGGAAGCATGGCTGGCAGGATGCTACTGTGGATGAAGTTTTCCCTCCAAATCACGTGTGGCATGTTAGGGACCCTAGTGGACCTCCCTTGAGGACTTCACTCAAGAGGTATTATGGAAAGGCTCCTGCTGTGGTGGAAGTGTGCATGCAAGCCGGCGCGCAGATCGCGGATGTGTACAAGCCCATGATGAGGCTTGACATTGTAATCCCGGACACCGATGAAGCAGGAATGATAATCTGACAGAATGTAGGCTGTGTTCGGGTGCAATTATACACCCATAATCGGAGTGAATCACCAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01386	33630	37069	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0003723 RNA binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001386s00028379.1	PF05634.6	APO_RNA-bind	66	266	6.80E-90
Glyur001386s00028379.1	PF05634.6	APO_RNA-bind	307	419	8.10E-27

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	12.981
SRR1783600	control	13.159
SRR1783602	moderate drought stress	13.013
SRR1811619	moderate drought stress	12.918

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	18.648
DRR006520	Root Summer glycyrrhizin high producing strain	18.303
DRR006521	Root Winter glycyrrhizin high producing strain	11.217
DRR006522	Root Winter glycyrrhizin high producing strain	10.922
DRR006523	Root Summer glycyrrhizin low producing strain	11.173
DRR006524	Root Summer glycyrrhizin low producing strain	11.229
DRR006525	Leaf Summer glycyrrhizin high producing strain	20.475
DRR006526	Leaf Summer glycyrrhizin high producing strain	20.562

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	7.706
SRR2868004	Drought Stress (root)	8.315
SRR2967015	Control (root)	8.109

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	10.239
SRR9715740	Leaf	15.876
SRR9715741	Leaf	11.831
SRR9715739	Root	12.776
SRR9715742	Root	9.906
SRR9715743	Root	11.520

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	3.626
SRR8749028	MeJA induced 9h	3.659
SRR8749029	MeJA induced 9h	2.709
SRR8749030	Uninduced	1.174
SRR8749031	Uninduced	0.235
SRR8749032	Uninduced	0.367

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	13.785
SRR8400027	Control - Root	14.362